PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_138220_udyu.t1
Common NameSOVF_138220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 151aa    MW: 16957.9 Da    PI: 10.1986
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_138220_udyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19841134
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                       C+ C+tt TplWR+gp g+++LCnaCG++yrkk+
  Sp_138220_udyu.t1  8 CADCKTTRTPLWRSGPHGPRSLCNACGIKYRKKK 41
                       ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-14257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-13448No hitNo description
Gene3DG3DSA:3.30.50.101.6E-16642IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.24E-12741No hitNo description
PROSITE profilePS5011412.492838IPR000679Zinc finger, GATA-type
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PfamPF003201.5E-17841IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MNEFKKICAD CKTTRTPLWR SGPHGPRSLC NACGIKYRKK KMADDEQHQH QQQRQPSSET  60
RREKQSSSRS GDYDENRVND QVLKRGYSNM GNRIFAQRSS LSSSSSSSSQ LKKQRSSSEE  120
SSITINSKRS LGEVEQAAVL LMSLSCGSCF A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835418.11e-108GATA transcription factor 16-like
TrEMBLA0A0K9QV171e-106A0A0K9QV17_SPIOL; Uncharacterized protein
STRINGXP_010674149.19e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-23GATA transcription factor 16