PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_138880_uedq.t1
Common NameSOVF_138880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 532aa    MW: 59008.9 Da    PI: 6.5895
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_138880_uedq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24232276145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e+
  Sp_138880_uedq.t1 232 DAEPGRCRRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVEQ 276
                        79****************************************997 PP
2QLQ552.5e-19164194232
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                        +FTaaQ+ +L++Q+++yKy++a++PvPp+Ll
  Sp_138880_uedq.t1 164 PFTAAQWKELERQAMIYKYMMASLPVPPDLL 194
                        8****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.3E-12163199IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.277164199IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.7E-14164194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.934232276IPR014977WRC domain
PfamPF088794.7E-20233275IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MKNNTENGNE SGVSRKKFQE NEQVVVVELG LKLHQQQQQD QDRSFLYNET RRSDHHDHDY  60
DYHHSDENSG PRCNVYNNNL MMMSPHIYSC SPVVADNSPS SVHSSSTTTT STSTAAGFVR  120
GLQPLDVSSS YYNTSSPAIA NPFFRNSGVM DETGGMATAA MGFPFTAAQW KELERQAMIY  180
KYMMASLPVP PDLLYSSFPT HLSPPSTFTP ASYFMGKYGG GLSMRWGGNS KDAEPGRCRR  240
TDGKKWRCSR DVAPNQKYCE RHMHRGRPRS RKHVEQQLQQ QQQQQQQQQH SLSSFSNNNK  300
QKDNVTPTKK TRLSDDVSSL NPPQCVGSSS KVSVFDHPLV SPANPFEDSR NLGWNDEQQW  360
SQLVHTNMNS SVFQQQFEGE PLSLNSHTGY NHKSGEMGLL ERPLIDAWSM GVAGNNENNG  420
RDSSSNNGGN SNVIDEEMCQ IHMGLGLIDS WVSTSTTPGG PLAEVLRPGN LTMSDVSEVE  480
FITPPATAVS SPSGVLQKTL ASFSDSSENN SPTTTTCHNS KANSDMPFHW LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944812e-61EU094481.1 Amaranthus hypochondriacus clone AHAAC006 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858157.10.0growth-regulating factor 7
TrEMBLA0A0K9QUR00.0A0A0K9QUR0_SPIOL; Uncharacterized protein
STRINGXP_010666149.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-36growth-regulating factor 7