PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_138880_uedq.t2
Common NameSOVF_138880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 526aa    MW: 58376.2 Da    PI: 6.7616
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_138880_uedq.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-24226270145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e+
  Sp_138880_uedq.t2 226 DAEPGRCRRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVEQ 270
                        79****************************************997 PP
2QLQ552.5e-19158188232
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                        +FTaaQ+ +L++Q+++yKy++a++PvPp+Ll
  Sp_138880_uedq.t2 158 PFTAAQWKELERQAMIYKYMMASLPVPPDLL 188
                        8****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.3E-12157193IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.277158193IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.6E-14158188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.934226270IPR014977WRC domain
PfamPF088794.6E-20227269IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKNNTENGNE SGVSRKKFQE NEQVVVVELG LKLHQQQQQD QDRSFLYNET RRSDHHDHDY  60
DYHHSDENSG PRCNVYNNNL MMMSPHIYSC SPVVADNSPS SVHSSSTTTT STSTAAGFVR  120
GLQPLDVSSS YYNTSSPAIA NPFFRNSGGM ATAAMGFPFT AAQWKELERQ AMIYKYMMAS  180
LPVPPDLLYS SFPTHLSPPS TFTPASYFMG KYGGGLSMRW GGNSKDAEPG RCRRTDGKKW  240
RCSRDVAPNQ KYCERHMHRG RPRSRKHVEQ QLQQQQQQQQ QQQHSLSSFS NNNKQKDNVT  300
PTKKTRLSDD VSSLNPPQCV GSSSKVSVFD HPLVSPANPF EDSRNLGWND EQQWSQLVHT  360
NMNSSVFQQQ FEGEPLSLNS HTGYNHKSGE MGLLERPLID AWSMGVAGNN ENNGRDSSSN  420
NGGNSNVIDE EMCQIHMGLG LIDSWVSTST TPGGPLAEVL RPGNLTMSDV SEVEFITPPA  480
TAVSSPSGVL QKTLASFSDS SENNSPTTTT CHNSKANSDM PFHWLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944812e-61EU094481.1 Amaranthus hypochondriacus clone AHAAC006 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858157.10.0growth-regulating factor 7
TrEMBLA0A0K9QWE20.0A0A0K9QWE2_SPIOL; Uncharacterized protein
STRINGXP_010666149.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-36growth-regulating factor 7