PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_139420_apag.t1
Common NameSOVF_139420
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 642aa    MW: 74227.1 Da    PI: 10.1241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_139420_apag.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1365149392
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        k +++ +v+    l+lp +f+++h  + ++++ ++le+ +g+++e k+    +   y l++GW++F+ + +L++gD+++F+l++ ++f+ 
  Sp_139420_apag.t1  65 KMMVKGNVSGGFFLRLPLPFCKAHIPV-KNPTIMVLETDTGERYEAKY--LPHC--YGLSGGWRRFAIDMKLEQGDTLIFQLVQPTKFKI 149
                        66777788888999**********433.36678999************..8888..88************************99777754 PP
2B341.13.3e-13249334699
                        ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++ + ++ g l lp +++++h  +    + ++le+e+g++++ k+    +s+r  l++GW +Fv   +L+egD vv++l++  +f  +v ++
  Sp_139420_apag.t1 249 MKGNISRGGTLALPAPYCRAHLPV--IVTNMVLETETGEQYTTKY--LPQSCR--LSAGWFRFVTKMRLEEGDAVVLHLIEAAKF--KVYII 332
                        5556677899***********533..4457***************..888877..9***********************987777..99988 PP

                        -S CS
                 B3  98 rk 99 
                        r+
  Sp_139420_apag.t1 333 RA 334
                        86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-1757155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-1459153IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.89863155IPR003340B3 DNA binding domain
SMARTSM010192.3E-1563155IPR003340B3 DNA binding domain
CDDcd100177.68E-1964153No hitNo description
PfamPF023621.1E-1164150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-15237336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17240341IPR015300DNA-binding pseudobarrel domain
CDDcd100178.66E-15242333No hitNo description
SMARTSM010194.9E-9244335IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828244335IPR003340B3 DNA binding domain
PfamPF023622.9E-11247334IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MRNPGKQKEV KPENFNNISK KQKKLRADRI RKKYFRLSRA LRKCDSVQDK KNHPKLNVEY  60
PATVKMMVKG NVSGGFFLRL PLPFCKAHIP VKNPTIMVLE TDTGERYEAK YLPHCYGLSG  120
GWRRFAIDMK LEQGDTLIFQ LVQPTKFKIF FIRVNSTNEV HFPVYLLNLV NRVKERVSSK  180
AGRNQQSFYN RGEVHHNYLQ RKIKELRAKK FWRKDLVVPQ VLGKGDLVHA KNIQSELDFE  240
HPVTVKWLMK GNISRGGTLA LPAPYCRAHL PVIVTNMVLE TETGEQYTTK YLPQSCRLSA  300
GWFRFVTKMR LEEGDAVVLH LIEAAKFKVY IIRANAKEVN LPNHLLDLLS HVKQSIPCKA  360
DSRQLIVYTR KVDRIEQQLR WKSARLKSRN GEGSILVGQG VLFSNITSFE EFKAVMNKLI  420
QNHQLPHYAL HDYYQLCCNQ NAFLHAHLFR GFNPRLNNQI IAGAITRIIL DTVNIANELS  480
TCKLSTFLQK YELWDQSLKT YEAYGMNVSF ILARLQHLKN LAVSSEGATD RSRYEEACHE  540
NERAKGEVRK LDLILAKLQT LELKLGEETY RQGYSLAKCV KAEIGSLEVL IQELGEFLSQ  600
YDAHIQELKL KVKAHEYKFH EKVSTPWLHL YSPTFESLEP SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714288.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A0K9QUI80.0A0A0K9QUI8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-28B3 family protein