PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_139830_zmqh.t1
Common NameSOVF_139830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 145aa    MW: 15439.1 Da    PI: 7.2895
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_139830_zmqh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.4e-1840119160
           trihelix   1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkr 60 
                        +Wt+++v++Li a+ +++++ +++                     +kk++W++vs++m+e+gf +sp+qC++k+++lnkr
  Sp_139830_zmqh.t1  40 KWTDNMVRLLIMAVYYIGDEAGNEVvsekkkasggsgggggggsmQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKR 119
                        7**************888887764223346777888899999999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-1638119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTQLTNSDDD EPGCANDQEN SSLDGKRKGG SSISPWQRMK WTDNMVRLLI MAVYYIGDEA  60
GNEVVSEKKK ASGGSGGGGG GGSMQKKGKW KSVSRAMMEK GFYVSPQQCE DKFNDLNKRE  120
MCAYHNSCGH GAGGISSEAA AASSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17182SGGSGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865528.11e-92uncharacterized protein LOC110804265
TrEMBLA0A0K9QW321e-102A0A0K9QW32_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010683922.14e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-28sequence-specific DNA binding transcription factors