PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_139930_anxo.t1
Common NameSOVF_139930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family RAV
Protein Properties Length: 385aa    MW: 42659.5 Da    PI: 9.2396
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_139930_anxo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.5e-1470118155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Sp_139930_anxo.t1  70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 118
                        89****9888.8*********3.....5**********99*************98 PP
2B395.53.6e-30200306194
                        EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                        f+kv tpsdv+k++rlv+pk++ae+h              + ++ +++ l led + ++W+++++y+++s++yvltkGW++Fvk++ Lk+gD
  Sp_139930_anxo.t1 200 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqggngtgtgtyS-SSSKGVLLNLEDVNEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGD 290
                        99***************************998888777742.334899******************************************** PP

                        EEEEEE-SSSEE..EE CS
                 B3  79 fvvFkldgrsefelvv 94 
                        +v F+++   +++l++
  Sp_139930_anxo.t1 291 IVSFQRSTGPDRQLYI 306
                        *****77656666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-2770125No hitNo description
PfamPF008473.0E-970118IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1770126IPR016177DNA-binding domain
PROSITE profilePS5103220.45571126IPR001471AP2/ERF domain
SMARTSM003807.4E-3071132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-2171126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.1E-39196314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-30198299IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-28199297No hitNo description
PfamPF023623.1E-27200305IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535200312IPR003340B3 DNA binding domain
SMARTSM010196.2E-25200310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDLSSMDESC STTDSLIPQM IPDIMKIAAA PFSGKASATA GSLCRMGSGT SVIIDSENGI  60
EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAARAYD VAAQRFRGRD  120
AVTNFKPLSI EDQSGAAELR FLNSRSKAEV VDMLRKHTYL DELHQSKRNF KVVDVHKLGI  180
GSTLSSDKSK PSDCGQEQLF EKVVTPSDVG KLNRLVIPKQ HAEKHFPLQG GNGTGTGTYS  240
SSSKGVLLNL EDVNEKVWRF RYSYWNSSQS YVLTKGWSRF VKEKCLKAGD IVSFQRSTGP  300
DRQLYIDYKQ RTIINESLGQ IVQAPLEIRS TGQMLRLFGV DICKVPTTMV EVPPGNGCGN  360
GKRYREVELL AMDSTSKKQM VVAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5419731211118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845494.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-136RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9QUD70.0A0A0K9QUD7_SPIOL; Uncharacterized protein
STRINGXP_010681667.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-136related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]