PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_140030_rtyc.t1
Common NameSOVF_140030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 294aa    MW: 32784.3 Da    PI: 6.8768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_140030_rtyc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-162267148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg++T++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sp_140030_rtyc.t1 22 RGNFTQQEEKTIIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTHL 67
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.426116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-10327IPR009057Homeodomain-like
SuperFamilySSF466898.38E-21374IPR009057Homeodomain-like
PROSITE profilePS5129424.5541771IPR017930Myb domain
SMARTSM007173.8E-152169IPR001005SANT/Myb domain
PfamPF002492.9E-152267IPR001005SANT/Myb domain
CDDcd001676.14E-102466No hitNo description
Gene3DG3DSA:1.10.10.602.2E-212872IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
LRRCSKSCRL RWTNYLRPGI KRGNFTQQEE KTIIHLQALL GNRWAAIAAY LPQRTDNDIK  60
NYWNTHLKKK LKKLEEGQDG QNTSSQEGLS SNSTSSTSSS YNNSNKGQWE RRLQTDIHMA  120
KQALCEALSI DKPELFPHPS PNSSPTLSLI TQQQQSTYAS NTENIARLLE NWTTRKPVSG  180
ALTPKSPQES TTQTTCNDNE EFKSLLSFNS NSNSNSNSST TTTTDNHSRV SPSMEVFQDE  240
SKPMFAAAAA AAAAAEEQVP LSLLEKWLFE EGVISHDHVN LMDLSLDAAT ADLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1837140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860329.11e-177myb-related protein 306-like
SwissprotP813921e-77MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0K9QUD30.0A0A0K9QUD3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010678525.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-60myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]