PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_140210_crie.t1
Common NameSOVF_140210
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family BES1
Protein Properties Length: 331aa    MW: 35662 Da    PI: 8.5652
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_140210_crie.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822203.27.7e-6321472149
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                        +++r+ptw+ErEnnk+RERrRRa+aakiy+GLR++G yklpk++DnneVlkAL+reAGwvve+DGttyrkg++ple+++++g sas+sp+ss
  Sp_140210_crie.t1   2 TGTRMPTWRERENNKKRERRRRAVAAKIYSGLRMYGSYKLPKHCDNNEVLKALAREAGWVVEEDGTTYRKGCRPLESMDMMGGSASVSPCSS 93 
                        689***************************************************************************************** PP

             DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsss 149
                        +         +   +sy++sp+sssfpsp+++ ++++a+     +sl+p+l++ls++sss
  Sp_140210_crie.t1  94 YP------VSPRAGASYNPSPASSSFPSPARSYFAPNANGtadpNSLIPWLKNLSSSSSS 147
                        **......44566789***************9998887667888**********997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.9E-623142IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTGTRMPTWR ERENNKKRER RRRAVAAKIY SGLRMYGSYK LPKHCDNNEV LKALAREAGW  60
VVEEDGTTYR KGCRPLESMD MMGGSASVSP CSSYPVSPRA GASYNPSPAS SSFPSPARSY  120
FAPNANGTAD PNSLIPWLKN LSSSSSSSAS PKLPFMYGPG GSISAPVTPP LSSPTCRTPR  180
TKTNDWDDNN VAPPWANQLN YSLPSSTPHS PGRQTFPEPG WLTNIQIPNG APASPTFSLV  240
SSNPFVSREM VMGAGGNSRM WTPGQSGTCS PIVAAESDRT SDIPMPDGMA AEFAFGNGMT  300
GGMVKAWEGE IIHEECVPDD LELTLGNSRM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-24576372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-24576372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-24576372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-24576372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852844.10.0BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-107BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A0K9QWG80.0A0A0K9QWG8_SPIOL; Uncharacterized protein
STRINGXP_010665681.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-88BES1/BZR1 homolog 4