PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_141040_qmwp.t1
Common NameSOVF_141040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 185aa    MW: 20552.8 Da    PI: 5.5452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_141040_qmwp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183888155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr ++ +g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+ +l+g
  Sp_141040_qmwp.t1 38 PVYHGVRKRR-WGKWVSEIREPRK---KTRIWLGSFPMPEMAARAYDVAAHCLKG 88
                       68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-133888IPR001471AP2/ERF domain
PROSITE profilePS5103222.013996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-303997IPR001471AP2/ERF domain
SMARTSM003801.1E-3139102IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-203997IPR016177DNA-binding domain
CDDcd000185.73E-304097No hitNo description
PRINTSPR003674.5E-114051IPR001471AP2/ERF domain
PRINTSPR003674.5E-117898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEHLPQCSSE FEDRAISPGS PSSGPQSSKS QGSGTRHPVY HGVRKRRWGK WVSEIREPRK  60
KTRIWLGSFP MPEMAARAYD VAAHCLKGCK AQLNFPEEID FLPRPTSCAP KDIQAAAAKA  120
ANAVVEGKVS SSAAADHFDH DHHDDVEVDY DDFWSEIELP ELMDTGQGGN FMDCYTSSSL  180
GEFYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1730101577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845199.11e-138ethylene-responsive transcription factor ERF023
SwissprotQ1ECI28e-54ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0K9QU671e-136A0A0K9QU67_SPIOL; Uncharacterized protein
STRINGXP_010696241.11e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]