PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_142310_fwnd.t1
Common NameSOVF_142310
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 686aa    MW: 77665.4 Da    PI: 4.9288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_142310_fwnd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.62e-1133136841374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+avss dl+ a++lL+++++ +sp+gd++qRla++++++L+arla+++s+++  ++  + s   ss+ l+a+kl++ + P+ +
  Sp_142310_fwnd.t1 313 LRNLLIQCAQAVSSFDLRTANELLKQIRQYSSPYGDSTQRLAHHVANGLEARLAGTGSTVSTNISDMKIS---SSDFLKAYKLYVSAIPFKR 401
                        689****************************************************999999888777777...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +s+++aN++I + +e+++++HiiDf++  GlQWp+L+qaL++Rp+gpp+lRiTg++ p++g   +e++++tg+rLa ++e++gvpf++   +
  Sp_142310_fwnd.t1 402 MSFFLANNTIFKLAEKATKIHIIDFGVFLGLQWPCLIQALSKRPNGPPELRITGIDFPQQGfrPAERVNATGRRLAGYCERFGVPFKYAG-I 492
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+++e+++le+L+++++E+++Vn++++  +llde+v+ +s++d++L+l+k+l+P+++++   +   +++ F +rf eal +ys+ f+ ++a+
  Sp_142310_fwnd.t1 493 AEKWENIQLEDLKIESDEMVIVNCMFRSGTLLDETVEPKSPKDALLRLIKNLNPEIFIHGIVNGTFTAPFFINRFKEALFHYSSAFEVFDAT 584
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpr+s+er  +E el g+e+ nvvaceg er++r et+++W+ r ++aG++++pl+ + +++ k++++  + + + v+e+++++++gWk+r 
  Sp_142310_fwnd.t1 585 LPRQSHERLLMESELCGKEVINVVACEGVERVQRPETYKQWQVRASRAGLRQLPLDREFMSKTKAMVKANYHEDFLVDEDRHCMLQGWKGRI 676
                        ***********************************************************************999****************** PP

               GRAS 367 LvsvSaWr 374
                          ++S+W+
  Sp_142310_fwnd.t1 677 FCALSFWK 684
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.01287664IPR005202Transcription factor GRAS
PfamPF035147.0E-111313684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MNSVLVDSDF LNSSVFKFNT EMFSNYLKNP AFGDFFQTPE FVDYETLHFE ENESKISLEA  60
PDLINLDTLS LDQNESNNSC LEVPDFPDDC LKFISDILSE ENLDENPASA QEYRALQATE  120
KSLYDVLGES YPYPYQHPPS LPNRNMKSPD ESFSPFESNL DHNQLQIDPV NVDEFVHSFL  180
ELNPQSSGLG SEDGEDGVVN DAVSDISNKP LPTAPKKEEK PVRVPRRKKS RQRDDVDQGG  240
RSNKLQAASS EDYAEMEQYD DVLLCSENNE DASFSPKECL ADKSSEKLSK ISGHGNKGAR  300
GKKQNIKVDE VDLRNLLIQC AQAVSSFDLR TANELLKQIR QYSSPYGDST QRLAHHVANG  360
LEARLAGTGS TVSTNISDMK ISSSDFLKAY KLYVSAIPFK RMSFFLANNT IFKLAEKATK  420
IHIIDFGVFL GLQWPCLIQA LSKRPNGPPE LRITGIDFPQ QGFRPAERVN ATGRRLAGYC  480
ERFGVPFKYA GIAEKWENIQ LEDLKIESDE MVIVNCMFRS GTLLDETVEP KSPKDALLRL  540
IKNLNPEIFI HGIVNGTFTA PFFINRFKEA LFHYSSAFEV FDATLPRQSH ERLLMESELC  600
GKEVINVVAC EGVERVQRPE TYKQWQVRAS RAGLRQLPLD REFMSKTKAM VKANYHEDFL  660
VDEDRHCMLQ GWKGRIFCAL SFWKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4931968525380Protein SCARECROW
5b3h_A9e-5031968524379Protein SCARECROW
5b3h_D9e-5031968524379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863662.10.0scarecrow-like protein 30
TrEMBLA0A0K9QTP60.0A0A0K9QTP6_SPIOL; Uncharacterized protein
STRINGXP_010685735.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-157SCARECROW-like 14