PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_142510_wegu.t1
Common NameSOVF_142510
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 360aa    MW: 39384.6 Da    PI: 7.3596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_142510_wegu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-13126170347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  Sp_142510_wegu.t1 126 PWTEEEHRLFLVGLQKLGKGDWRGIARSYVVSRTPTQVASHAQKY 170
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.036119175IPR017930Myb domain
SuperFamilySSF466893.09E-16121176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17122174IPR006447Myb domain, plants
SMARTSM007171.2E-10123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11123168IPR009057Homeodomain-like
CDDcd001679.44E-10126170No hitNo description
PfamPF002493.2E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGSNINSTT ATGGGGGGSS TCGGSGGGVR LFGVRLTDGN  60
FIKKSASMGN LSHYHSNSSA ATSPNNNNNN SPSSDPLHLV DGYLSDDPNH ASCSSNRRLE  120
RKKGRPWTEE EHRLFLVGLQ KLGKGDWRGI ARSYVVSRTP TQVASHAQKY YIRQTNATRR  180
KRRSSLFDMV PDMVTEEPET VGEEQILPPP PECRETENKA SLPSLDLSLS TEAEPMEEEE  240
EEVKEVKEEE DPQNKLTPSV PGFFVPIPYP HLWPENNNNI KQQHQVLKPT PVLRKEAVNV  300
DQLVGMSQLN LSETEKNTHP QLSLNLLGAP SRQSAFHVNV PVTSSDLNQG KNSAIQAISG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836143.10.0transcription factor MYBS3
TrEMBLA0A0K9QTS30.0A0A0K9QTS3_SPIOL; Uncharacterized protein
STRINGXP_010665911.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.15e-92MYB_related family protein