PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_143560_wfux.t1
Common NameSOVF_143560
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 366aa    MW: 41415.3 Da    PI: 4.7814
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_143560_wfux.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0689112226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        k  lC ff + G+C+ G +CkF+H+
  Sp_143560_wfux.t1  89 KSILCEFFKA-GQCSKGFKCKFSHD 112
                        6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-687112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44187114IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-587113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-589113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.897158196IPR000571Zinc finger, CCCH-type
SMARTSM003565.5158195IPR000571Zinc finger, CCCH-type
PfamPF165433.5E-15215297IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MPPKQSKADI AKKQKLVEDK TFGLKNKSKS KSVQKYVHSL QSSVQPKIDP KKTEAKKKKE  60
EEKAREKELN DLFKIAVTQP KVPVGVDPKS ILCEFFKAGQ CSKGFKCKFS HDLNVQRKGE  120
KIDVYTDKRG DEGTMEEWDL ETLEKAIAEK SKEYNQNKPT DIVCKHFLDA VERKQYGWFW  180
SCPNGGTKCM YRHALPPGYV LKSQMKALLE EEADKMAIED EIEDQRSKVK TTTPMTTELF  240
LQWKQKLADE KAANMASQSM ERAKNDRMSG RELFMANASL FVDDIGAWEE YERDESENKE  300
ANGKADNGSS AQNDVPSSSS GAANNDDDED DELDDLDDDL DEDELEELEA SLSKTSIQIK  360
EPGPSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853580.10.0zinc finger CCCH domain-containing protein 11
RefseqXP_021853635.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-170C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0K9QT710.0A0A0K9QT71_SPIOL; Uncharacterized protein
STRINGXP_010696358.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-153C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]