PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_144240_shwn.t1

Common Name

SOVF_144240

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

M-type_MADS

Protein Properties

Length: 302aa MW: 34196 Da PI: 9.9763

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_144240_shwn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.4	2.5e-15	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR+ g+lKK EL +LCd++++ i++s+ Sp_144240_shwn.t1 10 FIANDSARKATYKKRKRGLLKKMDELTTLCDVKACAILYSP 50 899************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.75	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.2E-20	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.82E-16	2	85	No hit	No description
SuperFamily	SSF55455	1.57E-22	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-15	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTRKKVKLAF IANDSARKAT YKKRKRGLLK KMDELTTLCD VKACAILYSP YEARPVVWPG 60 PSGARDVIAS FKRLPEMEKV KKMVSQEEFL RQRVAKAHDQ LKKQQKDNRE KDMTQVMYQC 120 LTGKSIQNMS LLDLSDLGWV INQHLSEINN RVDALKKENP SPNNNKNKIH NSNIKNNIRN 180 NVNIQSESGQ PPHHQNVVGP EKEGEGLQEE KEDFERPWSS FMDMIGPPMF FDHQPHPPLP 240 PHPHHNMGMG GRGLGYGLSG VTNGSASSST SNNNNMMMMM GQFGEYHGHG INPNMWSSGF 300 FP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFIANDSARKATYKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846789.1	0.0	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	8e-54	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A0K9QV84	0.0	A0A0K9QV84_SPIOL; Uncharacterized protein
STRING	XP_010692432.1	2e-68	(Beta vulgaris)
STRING	POPTR_0005s00420.1	9e-69	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-55	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]