PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_144670_xrwg.t1
Common NameSOVF_144670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 287aa    MW: 33024.1 Da    PI: 9.0949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_144670_xrwg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-1619911186
                       HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                       ++s+ +++pk+f  ++   g+++++kt  l d++ + W+vk+  + ++    +++GW +F+++++L+ gDf++F+++g
  Sp_144670_xrwg.t1 19 FQSN-FSIPKSFH-KYlgVGSEKGEKTALLIDKRQKIWDVKI--DLGD-NLQFKQGWVKFCEDHDLQIGDFLIFRHQG 91
                       4555.9******8.777945556789****************..6665.466899********************754 PP
2B343.65.4e-14178268495
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++ ++l++g++++pk+fa+++g+  ++  +++l+d +grs  +kl y  +k  g+ +l  G ++  k+ gL+ gD+v+F+l+ + + ++ 
  Sp_144670_xrwg.t1 178 SIVSRSNLSRGLIIIPKHFARKNGLTRRK-CDMVLTDIKGRSHMMKLGYegNKDCGSDFLH-GKRSLYKSYGLEKGDIVIFELICNGD-KPI 266
                        56788999***************998655.6****************99855555555566.*********************99633.344 PP

                        EE CS
                 B3  94 vk 95 
                        +k
  Sp_144670_xrwg.t1 267 MK 268
                        44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-204105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-206110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.4788103IPR003340B3 DNA binding domain
CDDcd100174.98E-149101No hitNo description
SMARTSM010196.5E-1311103IPR003340B3 DNA binding domain
PfamPF023626.5E-122190IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-10172264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-13174267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-13174271No hitNo description
SMARTSM010191.4E-6175273IPR003340B3 DNA binding domain
PROSITE profilePS508638.304175273IPR003340B3 DNA binding domain
PfamPF023621.7E-11179269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSLYRPTKPH FFQPLIPGFQ SNFSIPKSFH KYLGVGSEKG EKTALLIDKR QKIWDVKIDL  60
GDNLQFKQGW VKFCEDHDLQ IGDFLIFRHQ GFWVFDVFVF DPTSCEREFP TLDDESTTTV  120
VQALSSNGKD DTICFELTKN GDKPVITFYR VSIAEGDKKL LEQDFASFNS TCCRYFRSIV  180
SRSNLSRGLI IIPKHFARKN GLTRRKCDMV LTDIKGRSHM MKLGYEGNKD CGSDFLHGKR  240
SLYKSYGLEK GDIVIFELIC NGDKPIMKIY CCTKPVRKGK WSNNNMV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867120.11e-112B3 domain-containing protein REM14-like
TrEMBLA0A0K9QT120.0A0A0K9QT12_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-34B3 family protein