PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_144720_excs.t2
Common NameSOVF_144720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 719aa    MW: 79370 Da    PI: 5.0217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_144720_excs.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.7e-13666715148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        r++W+ eE++ l  avk+lG + Wk+I ++ g   +gR+  ++k++w++ l
  Sp_144720_excs.t2 666 RKKWSVEEEDTLRVAVKELGRN-WKLILQCHGdafEGRSNVDLKDKWRNML 715
                        789*****************66.*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.596663719IPR017930Myb domain
SMARTSM007175.5E-10665717IPR001005SANT/Myb domain
PfamPF002493.6E-10666715IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12666719IPR009057Homeodomain-like
CDDcd116608.80E-13667716No hitNo description
SuperFamilySSF466893.26E-12668717IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MDEKVAKWII EFLLRKPIDE KIINGVLSCL PLSNNDKRLK KTILLRKIES AISDGSVSEK  60
LLELLEMVDE LNHGAGKTVP DSMKRAYCAV AVDCTVRFLE ENVEENGKYF EAVERVWRDR  120
VCKVESLVSE ELNRWLEDIE AAVWDSSVCE KILMRNTRNE ALRAVKRYLK EAWESMGPSF  180
LELVALKVGN DVGELCRSEG GGGGDGGGGG GSGSSGGGGS GGVVGSDNPC RTLIDPQGLV  240
ESQAFNRRKH VAVKTRRPRG IKIFDAVEAA ETSMNTANDI QTREMDKVQE TLQPSSTQQH  300
GAANDSHPST SRTAHNLSCG KNNDAPIYKM DKVQEALQPS STQLHGAVND SHPSTSRTAR  360
NLSCGKDNDA PIFKMDKVQE ALESNSFHLH ADVSDSHLDP LEAVHNMSVT KVTDNMSNLN  420
AIKKQTTHET PEVRRVQEAL NFSARELHEA VTDPLPEALE IAKTLSSAVG ATLNHGTGHV  480
TGVENQNTSN DDVLENQTTS NDDVLENQNT GNDGVFENHN TGSDTVFENH NTGNDAVLEN  540
QNTGNDAVLE NRNTGNDDVL ENQIQPPVIH ATEKNTENVE EEMPELAGDA QGNNETDDPK  600
KQHRSKRSLM EANGTSHTFE WDDSIDNVNR GSELHLPPSP KRSKVTPLEQ YEDKPKPKPQ  660
PLIKGRKKWS VEEEDTLRVA VKELGRNWKL ILQCHGDAFE GRSNVDLKDK WRNMLRSQL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857414.10.0protein CLEC16A homolog isoform X2
TrEMBLA0A0K9QSX40.0A0A0K9QSX4_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-17TRF-like 5