PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_144730_qoik.t1
Common NameSOVF_144730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 274aa    MW: 30793.9 Da    PI: 9.4005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_144730_qoik.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173787155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a+  l+g
  Sp_144730_qoik.t1 37 KKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAACLLRG 87
                       589*******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.73E-183794No hitNo description
SuperFamilySSF541718.5E-193896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-273895IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853895IPR001471AP2/ERF domain
SMARTSM003802.1E-3538101IPR001471AP2/ERF domain
PfamPF008472.9E-123887IPR001471AP2/ERF domain
PRINTSPR003672.9E-73950IPR001471AP2/ERF domain
PRINTSPR003672.9E-76177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEIQFQQKKV EQKSVIPENN KVRKLKGRSS NNGNRKKKFV GVRQRPSGRW VAEIKDTTQK  60
IRMWLGTFET AEAAARAYDE AACLLRGSNT RTNFVVTHVS PNSPVASRIK NLLNNKKFDC  120
QKSNNPPTNT NTIAATNTFS TPLNLASSIN HTHNNGDIYR PQPQPQPQVM SGFVGNYELV  180
DYSCLFQCGM PDMNPNLPLS LNSSQNQSQE TMAKNVLLPV PPPMGTELLD IQKMQMDKDI  240
SQTSTASYDF FDFLNDPIQS LWDLPPLYSS FCSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12336KLKGRSSNNGNRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738209.16e-95ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0K9QV320.0A0A0K9QV32_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-28related to AP2 11