PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_144750_kgyu.t1
Common NameSOVF_144750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 368aa    MW: 43112.1 Da    PI: 8.6404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_144750_kgyu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.8e-1129120198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffk  +p+   +++ l++p +fa+++  +    +  tl +++g  +++ +  ++  ++ ++t+ W +F + n++k g f+ F ++g+s f  
  Sp_144750_kgyu.t1  29 FFKLILPHILEQNSSLRIPETFAKKFTPQ--IRTFATLATRTGLPFKIVV--ERIENGLYFTERWAKFMEYNHIKYGYFLEFAYEGNSHF-- 114
                        88889999999999*********999633..55679**************..**********************************9999.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v +f+
  Sp_144750_kgyu.t1 115 KVYIFD 120
                        999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1623123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1725122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1129120No hitNo description
PfamPF023621.6E-929120IPR003340B3 DNA binding domain
PROSITE profilePS5086310.29229122IPR003340B3 DNA binding domain
SMARTSM010195.9E-529122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-10183274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-10183275IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-9184283No hitNo description
SMARTSM010190.0039186286IPR003340B3 DNA binding domain
PROSITE profilePS508639.206187286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVEEKKKRRR EEEGKPNDEL KFKINPNKFF KLILPHILEQ NSSLRIPETF AKKFTPQIRT  60
FATLATRTGL PFKIVVERIE NGLYFTERWA KFMEYNHIKY GYFLEFAYEG NSHFKVYIFD  120
LSCTEIEYPV VELDQHANQK VPRNRNRDGK SKENQEAVEE EEEAEKDKHK DGVVLESNRH  180
NINPSFSIVV RNCSLLRGGA YLHIPTNFTK EHMEGGHLFK YVMLEGDDGR DWCIDCYFCH  240
GVGLRLNGPR WRKFVLRYDW EEGDTYTFEL VDKKQDYATF KISPGRINKL IDHRRVVHLF  300
YIFTLLIPLS LSLSVSPVTL LSSHFSVLTQ PRNQPNWPTP ATPANHRPPQ ATAHPPTAIT  360
QPQHTYQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
149KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855105.10.0B3 domain-containing protein At1g49475-like
TrEMBLA0A0K9QUK50.0A0A0K9QUK5_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.15e-18B3 family protein