PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_148690_xaog.t1

Common Name

SOVF_148690

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 230aa MW: 25221.1 Da PI: 6.8025

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_148690_xaog.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.6	3.9e-33	78	154	6	80
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.eaessss 80 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+ +tgt++ +a + ++++sss Sp_148690_xaog.t1 78 SSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRTDGQTIEWLLRHAEPSIIRATGTGTVPAvaD-FtSPAKSSS 154 689*********************************************************77777321.122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-29	79	197	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.785	80	134	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MNHHEPPKVT MGSETTILSN HLSTSDQPQF ESPESQPSLP LSFSLPFPPM SITSSAAKST 60 TTTASTTTKL AVSRRRVSST KDRHTKVNGR GRRVRMPPLC AARIFQLTRE LGHRTDGQTI 120 EWLLRHAEPS IIRATGTGTV PAVADFTSPA KSSSTPAIAA LPLSIDNGWH FPSQTVGLEF 180 GYRHIPSFTA LLLQPDDGEL RMRQQHEGQD QDEEQGDPAD FAIAKEEDQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859588.1	1e-169	transcription factor PCF1
TrEMBL	A0A0K9QRN6	1e-168	A0A0K9QRN6_SPIOL; Uncharacterized protein
STRING	XP_010684094.1	1e-64	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	3e-34	TCP family protein