PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_149060_opyo.t1
Common NameSOVF_149060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 172aa    MW: 19758.9 Da    PI: 6.1552
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_149060_opyo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.31.1e-5364159297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y++plk yl +yr++
  Sp_149060_opyo.t1  64 KEQDRLLPIANVGRIMKNILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSSLGFDEYADPLKRYLYRYRQF 155
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        ege+
  Sp_149060_opyo.t1 156 EGER 159
                        *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.9E-5258167IPR009072Histone-fold
SuperFamilySSF471131.01E-3866162IPR009072Histone-fold
PfamPF008088.6E-2869133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-1997115No hitNo description
PROSITE patternPS006850100116IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-19116134No hitNo description
PRINTSPR006155.4E-19135153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVDNISPYTN KVLLPNYNLT ATSSSSQQHH HGNYIYHESN TKNSAENEDQ PYNEHEDQAS  60
GTIKEQDRLL PIANVGRIMK NILPPNAKIS KEAKETMQEC VSEFISFVTG EASDKCHKEK  120
RKTVNGDDIC WALSSLGFDE YADPLKRYLY RYRQFEGERI ANQNKDKEIF HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4463154192Transcription factor HapC (Eurofung)
4g92_B5e-4463154192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856171.11e-128nuclear transcription factor Y subunit B-5
SwissprotO822481e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0K9QRK11e-127A0A0K9QRK1_SPIOL; Uncharacterized protein
STRINGXP_010684402.18e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]