PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_150660_wdog.t1
Common NameSOVF_150660
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARR-B
Protein Properties Length: 249aa    MW: 28072.4 Da    PI: 4.5471
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_150660_wdog.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.34.4e-10171216551
            G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         Wt+ L ++ ++ v+ L G ++AtP ++ + m+v+gLt++ v   LQ
  Sp_150660_wdog.t1 171 TWTSSLEANLIRIVRDL-GVDVATPAELIRRMNVPGLTIDFVIEKLQ 216
                        7****************.**********************9998888 PP
2Response_reg471.4e-16111151105
                        EEEES.SSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
       Response_reg   1 vlivd.Deplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                        +l+vd D ++ r+ l+++l+ ++y +v +a +g++al++l++k+  +Dl+l+  ++p+m ++e+l  ++ +  +lp+++v ++   +++l+ 
  Sp_150660_wdog.t1  11 ILLVDpDTRSSRNTLEVLLD-ANY-RVVTACQGTDALNTLQNKKrkVDLVLMTTKLPDMCAFEVLDILQMNF-RLPVVMVCDTYHGPTMLRF 99 
                        68885377777777777777.***.***************998888**********************9999.9****************** PP

                        HHTTESEEEESS--HH CS
       Response_reg  90 lkaGakdflsKpfdpe 105
                        l+ Ga+ +l+Kp  p+
  Sp_150660_wdog.t1 100 LQNGAMYCLVKPLLPK 115
                        ************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-187124IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-188126No hitNo description
SMARTSM004481.6E-79121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.26310125IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.3E-1211117IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.63E-1112115No hitNo description
Gene3DG3DSA:1.10.10.606.8E-8170217IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDVKSFTDIC ILLVDPDTRS SRNTLEVLLD ANYRVVTACQ GTDALNTLQN KKRKVDLVLM  60
TTKLPDMCAF EVLDILQMNF RLPVVMVCDT YHGPTMLRFL QNGAMYCLVK PLLPKNVKTL  120
WQHSIIMERE LNRDYCESPL LEFTDKEAEN HQAEELDKGE GSSTGLSSSF TWTSSLEANL  180
IRIVRDLGVD VATPAELIRR MNVPGLTIDF VIEKLQELEI YPETLELQFN SVTVSPTPAP  240
HPIAGPEMP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860515.10.0two-component response regulator ORR21-like isoform X1
TrEMBLA0A0K9QR320.0A0A0K9QR32_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-22response regulator 2