PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_152170_wfqt.t1
Common NameSOVF_152170
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 303aa    MW: 34044.3 Da    PI: 4.3197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_152170_wfqt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-1866125155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr++  +g+WvAeIr p+++       + +r +lg+f ta eAa+a+++a++ l+g
  Sp_152170_wfqt.t1  66 CRYRGVRQRV-WGKWVAEIRKPCSREveisgSKvRRLWLGTFSTAIEAARAYDEAARVLYG 125
                        78******99.**********9995566554336**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.45E-2766135No hitNo description
PfamPF008474.7E-1266125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2867134IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1867134IPR016177DNA-binding domain
PROSITE profilePS5103222.22167133IPR001471AP2/ERF domain
SMARTSM003806.1E-3067139IPR001471AP2/ERF domain
PRINTSPR003679.4E-106879IPR001471AP2/ERF domain
PRINTSPR003679.4E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSFGNEEQVE RKKRRQDARI PVSETLAKWR EKIPDDSEFG RKQNQKPKGS RRGCMRGKGG  60
PENSSCRYRG VRQRVWGKWV AEIRKPCSRE VEISGSKVRR LWLGTFSTAI EAARAYDEAA  120
RVLYGPSAFL NFPDNGSVST GGSSVNSVMT CSLAECDDED DPNFLEAEGT NMAKDAATKE  180
GFDDLQRMPD SFADVKKEQD EAISARDWKD LLVESMDGVA IEHSSSRDCG DDLSSPDMVY  240
GSWQQQDIGS TDLDDATGLI NFNGDSVDYE DFTEFINFDG DSFDFGDVTD LIYFDRDIDN  300
QKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14671411480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866085.10.0dehydration-responsive element-binding protein 2A-like
TrEMBLA0A0K9QQR70.0A0A0K9QQR7_SPIOL; Uncharacterized protein
STRINGXP_010676822.14e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-32ERF family protein