PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_152280_teso.t1
Common NameSOVF_152280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 534aa    MW: 60094.4 Da    PI: 6.7519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_152280_teso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-056183123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cg++F++      H+r+H
  Sp_152280_teso.t1 61 FVCNLCGRRFRSARAVFGHMRSH 83
                       89********************9 PP
2zf-C2H211.80.00076448470123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+k F++   L  H+r H
  Sp_152280_teso.t1 448 HKCVVCSKDFRTGQALGGHMRAH 470
                        79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-76083No hitNo description
SMARTSM003550.00116183IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-56185IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0926188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-7379403No hitNo description
SMARTSM003554.2384405IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-7384403IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-5446474No hitNo description
SMARTSM003550.23448470IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-8448470IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097448475IPR007087Zinc finger, C2H2
PROSITE patternPS000280450470IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MQNFPNVRDE VLPQNSAKKS ENIHKIQLGI RKKHRLSDNL REMPKSCWWV SSEPNKNGEN  60
FVCNLCGRRF RSARAVFGHM RSHSKRKAAA KVKDYAVKEE IIERSNTPRK KRSGRRYTIK  120
TSSSNGSSWC NLNNSHSSVT VADEELLDIA ASLLKLSKGG FCDHVSDNDN DDDSVKMEPR  180
LPIDSVSNID KDDDHVAERV CDVESGLNFD VMRAKCDSFQ DEIKEFHGFN CGLPKSKRGN  240
FEHGPVSDVE IQSELMYDAE IKDGAIGVLV NGILLDYSNP ISFVPAVEET KSRTADVVDR  300
MLNEWNSRTC DPTDENNIES GPIVHNELFD AEIKDESREV LLADTLVHSM SSDPVIEEKK  360
QENVADKCKS GSSEPATDSC SKNYICSICN RSFPSHQSLG GHRLHCQRLC GLEIRAHMIR  420
TDITVVEEQG GKNEMKFGDN EKKKRWKHKC VVCSKDFRTG QALGGHMRAH FNGKVESNET  480
ENLAAIKEKN DSNDNRVLPA VIEERKHDKD VCSNELLKER HIVISSQGNT PLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856650.10.0uncharacterized protein LOC110795921
TrEMBLA0A0K9QQL70.0A0A0K9QQL7_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-13C2H2 family protein