PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_152590_mfcu.t1
Common NameSOVF_152590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 231aa    MW: 26497.7 Da    PI: 9.8491
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_152590_mfcu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.11.3e-141394186
           trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                       +W ++ + +Liea  e+  r++rg+l++++W +v++++ + g+  +r+ +qCk++++ ++k+yk +k+++        st+++f++l+
  Sp_152590_mfcu.t1 13 CWNEESTGVLIEAWGERYLRSNRGNLRQNDWNDVADAVNSAGVirRRTDIQCKNRIDTIKKKYKVEKARSPP------STWRFFQRLD 94
                       7*************************************999997677********************99996......58****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-251295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGTPKQSGGR DDCWNEESTG VLIEAWGERY LRSNRGNLRQ NDWNDVADAV NSAGVIRRRT  60
DIQCKNRIDT IKKKYKVEKA RSPPSTWRFF QRLDFLIGNV NVVKVSDTKN ASPSPNPNPN  120
PNSRLSLNSS NSSESTQSNE GGAAVEMEVD VEERDRETAV RELARAVVKF GEVYERIESW  180
KQEKVMELEK QRMELAKELE FQRMNMFVDA QIQLEKFKHS NKKSASRGKK L
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841627.11e-170trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-30ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0K9QQJ31e-169A0A0K9QQJ3_SPIOL; Uncharacterized protein
STRINGXP_010689410.18e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-34sequence-specific DNA binding transcription factors