PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_152600_coqp.t1

Common Name

SOVF_152600

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

LBD

Protein Properties

Length: 191aa MW: 21308.2 Da PI: 7.1358

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_152600_coqp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+l+r+C ++C++ap+f a++pkkfa vhk+FGasnv+k+l+++pee+red+++sl yeAear+rdPvyG++g + lq+++ ql++ Sp_152600_coqp.t1 14 SCAACKLLKRRCIPNCIFAPHFRADEPKKFAKVHKVFGASNVSKILNEVPEEHREDTVNSLSYEAEARLRDPVYGCIGAVVLLQRRMFQLQH 105 6***************************************************************************************** PP DUF260 93 elallkee 100 +lal++++ Sp_152600_coqp.t1 106 DLALARAR 113 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-39	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKKCYNNDLR STSSCAACKL LKRRCIPNCI FAPHFRADEP KKFAKVHKVF GASNVSKILN 60 EVPEEHREDT VNSLSYEAEA RLRDPVYGCI GAVVLLQRRM FQLQHDLALA RARLAHYKAS 120 SLHTNTNNVV TANINTDDNG LFGLDDHNTV SITNMINLCG EELISSDQLS QSDIGVYNTT 180 DFGQVPDLLP L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	11	122	8	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	11	122	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841566.1	1e-142	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-54	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0K9QQM5	1e-140	A0A0K9QQM5_SPIOL; Uncharacterized protein
STRING	XP_010689397.1	1e-101	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-52	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]