PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_153450_gmir.t1
Common NameSOVF_153450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 229aa    MW: 25387.3 Da    PI: 5.1536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_153450_gmir.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-1654103255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++G+r++  +g+Wv+e+r+p   +k++r++lg+f ta++Aa+a++ a+ +l+g
  Sp_153450_gmir.t1  54 IFRGIRQRN-NGKWVCEVREP---NKKTRIWLGTFPTADMAARAHDVAAMALRG 103
                        59****999.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-2853114No hitNo description
PfamPF008472.6E-1253103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2954114IPR001471AP2/ERF domain
PROSITE profilePS5103221.40454112IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1854113IPR016177DNA-binding domain
SMARTSM003807.2E-2854118IPR001471AP2/ERF domain
PRINTSPR003673.3E-85566IPR001471AP2/ERF domain
PRINTSPR003673.3E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEMFSHHNNG GACSPYDGMS PNSNSTDEEG LMLASAYPKK RAGRKKFKET RHPIFRGIRQ  60
RNNGKWVCEV REPNKKTRIW LGTFPTADMA ARAHDVAAMA LRGRSGACLN FADSAWRLPI  120
PASSDTKDIQ RAAAEAAELF RPQPPPSEEE ETVAEQPETA AGTSNSTNMS FSNNAELYMD  180
YESEMSSPGM IAEMYHGMGM LPPPSDHFTG WTGNYEEEGT DLPLWNFSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842100.11e-172dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ936e-65DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0K9QQB21e-171A0A0K9QQB2_SPIOL; Uncharacterized protein
STRINGXP_010693509.12e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-54C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]