PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_154490_zhap.t1
Common NameSOVF_154490
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22924.8 Da    PI: 8.0233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_154490_zhap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.68.8e-252068149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ++ienk ++qvtfskRr+gi+KKA+EL++LC+a++av+ fs  gk++++
  Sp_154490_zhap.t1 20 EKIENKARKQVTFSKRRKGIFKKASELCTLCGAKIAVLTFSGAGKIFTF 68
                       57**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-301271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3291272IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-261389IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-191434IPR002100Transcription factor, MADS-box
PfamPF003192.0E-232168IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAKENEVKTK PLGKRKIPIE KIENKARKQV TFSKRRKGIF KKASELCTLC GAKIAVLTFS  60
GAGKIFTFGD PSADEVINTW HANRSPPPSW WSDDAPSERV EYERMKMNDT TTYSDDDKDK  120
DLFWWQKDIE GLGFNELVEY MASLKELRNN VASKIGDCLG KNVDVSSRNN QDGLDLNMAY  180
NPTNNEGEDT MNFPISFKPK SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865742.11e-149agamous-like MADS-box protein AGL61
TrEMBLA0A0K9QQ181e-148A0A0K9QQ18_SPIOL; Uncharacterized protein
STRINGXP_010691815.12e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-26AGAMOUS-like 61