PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_154640_utwj.t1
Common NameSOVF_154640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 245aa    MW: 28410.6 Da    PI: 5.059
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_154640_utwj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.9e-194599256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++++f++eq++ Le+ Fe++ +++ +++ + A++lgL+ rqV +WFqN+Ra++k
  Sp_154640_utwj.t1 45 NNKRRFSDEQVKSLETIFESETKLDPRKKVQVARELGLQPRQVAIWFQNKRARWK 99
                       67889*************************************************9 PP
2HD-ZIP_I/II118.73.1e-3846137293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +krr+s+eqvk+LE+ Fe+e+kL+p++Kv++areLglqprqva+WFqn+RAR+ktkq+Ek+y++Lk++yd+lk + e ++ke e+L ++l+e
  Sp_154640_utwj.t1  46 NKRRFSDEQVKSLETIFESETKLDPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQIEKNYRVLKSNYDNLKVRLEGIKKERESLLQQLQE 137
                        79***************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1925102IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1833103IPR009057Homeodomain-like
PROSITE profilePS5007118.07441101IPR001356Homeobox domain
SMARTSM003899.7E-1843105IPR001356Homeobox domain
CDDcd000862.23E-1444102No hitNo description
PfamPF000464.2E-164499IPR001356Homeobox domain
PRINTSPR000312.9E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000312.9E-58197IPR000047Helix-turn-helix motif
PfamPF021836.3E-12101140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLMQGREEPS LDATTEPDFE VEPWSGEEEE EDTPTTTRKK RKSRNNKRRF SDEQVKSLET  60
IFESETKLDP RKKVQVAREL GLQPRQVAIW FQNKRARWKT KQIEKNYRVL KSNYDNLKVR  120
LEGIKKERES LLQQLQELRS VVEKSHDKEN GCKDVAAKEN GEIAAGVTEK SSSLQEEMDN  180
QGALYSDDDK SGNMIYLGPE EPDLMKVREH IDGSIISPPV KWCSFDAGSL FDQTNSSSHW  240
WDNWT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858019.10.0homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-48ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0K9QS261e-180A0A0K9QS26_SPIOL; Uncharacterized protein
STRINGXP_010666163.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.19e-42homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]