PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_157040_pzdo.t1

Common Name

SOVF_157040

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 746aa MW: 81385 Da PI: 6.9118

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_157040_pzdo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg Sp_157040_pzdo.t1 302 PCPEFRK-GTCSRGDLCEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	3.42E-15	41	166	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.3E-16	52	166	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.2E-9	82	155	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.068	86	116	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	18.935	86	188	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.02E-13	86	164	No hit	No description
PRINTS	PR01415	2.9E-5	87	102	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.262	121	156	IPR002110	Ankyrin repeat
SMART	SM00248	0.0018	121	153	IPR002110	Ankyrin repeat
PRINTS	PR01415	2.9E-5	140	154	IPR002110	Ankyrin repeat
SMART	SM00356	2.5E-5	297	323	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.652	302	324	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.9E-6	302	322	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	330	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	21	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MCGALDQSNS SSNSAAQSAL EHNSNTTNTM KEPNHVAINC FSNILELAAS DDVQGFNKML 60 EHDASAICES GLWYGRQKGS RQMVLEHRTP IMVAATYGSL DVLKLILAQP GFDVNFSGVP 120 DKSTALHCAS CGGSVNADEV VKLLLESGAD ANAVDMNGRR PFDVIVVPPN LPSKRASLEY 180 LLANNTSIIG PKMRVSVGSS GSSSPPLSSS PDNGSSSDSG ISPKILKSTF NQPPEKKEYP 240 IDPSLPDIKN SIYTTDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC 300 VPCPEFRKGT CSRGDLCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTPDELRP 360 LYASTGSAVS SPRASASAAA VMDMAAAMNL FPSSPSSISA MSPSPFSPQC MSPPANAASN 420 SPWPPQQNVP TLHLPGCNIQ SSRLRSSLSS RDIPPENFHM LSDFDAKQHM LDDHMASFLQ 480 PRSNPSSLMR AVRTKSLAPS NLEELFCSEI ASSPRYSEQA AAAVFSPTHK SVLINQYQQQ 540 QCLLAPINTS NIYSPKSVEH PLLQASLNVS SPGRMSPRSF EPISPMSARL SALALREQQQ 600 QQQQQQQQQH QQQQQQHQQL RSLGSREYGA KHASSLVGSP VHPWSNWGSP NGKLDWSVNG 660 GGDEVGQLRR SSSFEIGNNE EEPDLSWVQS LVKESPPEMR EKHAASVSGP IPSAEGLATK 720 ASADPVDYSV VGAWLEHMQL DQLVNQ

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MCGALDQSNS SSNSAAQSAL EHNSNTTNTM KEPNHVAINC FSNILELAAS DDVQGFNKML  60
EHDASAICES GLWYGRQKGS RQMVLEHRTP IMVAATYGSL DVLKLILAQP GFDVNFSGVP  120
DKSTALHCAS CGGSVNADEV VKLLLESGAD ANAVDMNGRR PFDVIVVPPN LPSKRASLEY  180
LLANNTSIIG PKMRVSVGSS GSSSPPLSSS PDNGSSSDSG ISPKILKSTF NQPPEKKEYP  240
IDPSLPDIKN SIYTTDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC  300
VPCPEFRKGT CSRGDLCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTPDELRP  360
LYASTGSAVS SPRASASAAA VMDMAAAMNL FPSSPSSISA MSPSPFSPQC MSPPANAASN  420
SPWPPQQNVP TLHLPGCNIQ SSRLRSSLSS RDIPPENFHM LSDFDAKQHM LDDHMASFLQ  480
PRSNPSSLMR AVRTKSLAPS NLEELFCSEI ASSPRYSEQA AAAVFSPTHK SVLINQYQQQ  540
QCLLAPINTS NIYSPKSVEH PLLQASLNVS SPGRMSPRSF EPISPMSARL SALALREQQQ  600
QQQQQQQQQH QQQQQQHQQL RSLGSREYGA KHASSLVGSP VHPWSNWGSP NGKLDWSVNG  660
GGDEVGQLRR SSSFEIGNNE EEPDLSWVQS LVKESPPEMR EKHAASVSGP IPSAEGLATK  720
ASADPVDYSV VGAWLEHMQL DQLVNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021838117.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0K9QP90	0.0	A0A0K9QP90_SPIOL; Uncharacterized protein
STRING	XP_010695261.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-143	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]