PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_157210_rchm.t1
Common NameSOVF_157210
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 270aa    MW: 30836 Da    PI: 9.655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_157210_rchm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.5e-1521107497
                        E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         + p + + ++ +++p +f++++   g    e+  ++l   + r W vkl  ++  gr+ +++GWkeF+  n+L +gDf+vF+++ +  f +
  Sp_157210_rchm.t1  21 FMQPLSPGFLNTFSIPESFLDRFkadG---YEPEIMVLVVDDKRNWPVKL--KG--GRH-FGDGWKEFAVHNDLGVGDFLVFTHVFN--FIF 102
                        556667777899***********6543...4555688888899*******..44..444.899********************7764..444 PP

                        EEEEE CS
                 B3  93 vvkvf 97 
                        +v+v+
  Sp_157210_rchm.t1 103 NVTVY 107
                        66665 PP
2B3567.4e-18173260897
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++ +k+++  +pk+f+++ g+  ++   ++l d +g++W+vkl+ +k+sg+ ++++GWk+F  a+ Lk gD+++F++ + +++++v+k +
  Sp_157210_rchm.t1 173 PSGFKNSQANFPKEFIRSTGLFRRC-CYMKLVDGEGKTWKVKLNSKKRSGQSYIGEGWKDFQVAKSLKPGDVIIFQMLK-NGERPVLKCY 260
                        677899999**********998766.59***************99999999*************************877.5555777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.78718110IPR003340B3 DNA binding domain
CDDcd100175.08E-1620108No hitNo description
Gene3DG3DSA:2.40.330.109.3E-1620110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-1220102IPR003340B3 DNA binding domain
SMARTSM010192.2E-1721110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-1621111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-18160258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-18162258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196166262IPR003340B3 DNA binding domain
SMARTSM010191.8E-10167263IPR003340B3 DNA binding domain
PfamPF023621.5E-15173260IPR003340B3 DNA binding domain
CDDcd100171.44E-18183261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRETEISEEP KSKNLSHGAK FMQPLSPGFL NTFSIPESFL DRFKADGYEP EIMVLVVDDK  60
RNWPVKLKGG RHFGDGWKEF AVHNDLGVGD FLVFTHVFNF IFNVTVYDPT TASARQYSPF  120
SNDSNFEGTQ KTDGLNFNDR FTHKRNPVED DAATAQVPSV ESQYPSCRVT LCPSGFKNSQ  180
ANFPKEFIRS TGLFRRCCYM KLVDGEGKTW KVKLNSKKRS GQSYIGEGWK DFQVAKSLKP  240
GDVIIFQMLK NGERPVLKCY RLCSRKRHRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836052.10.0B3 domain-containing protein REM8-like
TrEMBLA0A0K9QR870.0A0A0K9QR87_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-29B3 family protein