PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_157670_ouaa.t1
Common NameSOVF_157670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 216aa    MW: 23884.4 Da    PI: 5.1613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_157670_ouaa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09110156455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+ + + f  L +++P +     kK +K ++L +A++++++Lq
  Sp_157670_ouaa.t1 110 DHIMAERKRRELLGQLFISLSTIIPGL-----KKIDKTTVLGEAIKHMRQLQ 156
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.88E-8100159No hitNo description
PROSITE profilePS5088812.976106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-14110171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEIDVDPIFS NPYHQSDTMD EQLLAVTSDT ASPQEDFDCD LIEQFILSPP HHHLSDFNDD  60
DNNNDDNDGV SFNVQESPPL MKQKKETKKK QAVSSVNTTK RRRQPRQVQD HIMAERKRRE  120
LLGQLFISLS TIIPGLKKID KTTVLGEAIK HMRQLQEKVN VLEEIAAERT VESFVIDYSA  180
SGGSSGGGGG ADGGGGGSDR SLPAIEVKTX GNFKKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100118RRRQPRQVQDHIMAERKRR
2114119ERKRRE
3184197SGGGGGADGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839235.11e-109transcription factor bHLH25-like
TrEMBLA0A0K9QR421e-157A0A0K9QR42_SPIOL; Uncharacterized protein
STRINGXP_010683065.17e-43(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-22bHLH family protein