PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_158140_zshu.t1
Common NameSOVF_158140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 348aa    MW: 38920.7 Da    PI: 7.3273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_158140_zshu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.84.3e-14271296126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ +++t tC+yGd C+FaHg
  Sp_158140_zshu.t1 271 FKTELCNKWQETKTCPYGDHCQFAHG 296
                        79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18265303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-11267302IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478270298IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11271296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8304337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-12304334IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878308336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQQDTPASTM MMNQMSSAAD IFSPPPYSSI FFHSATSPTT FKASPCTSEG QSTINAASFA  60
TTAAKHLSRL MSDHKELLSR QSLCLAQLRK TFKEAETLRQ ENTNLRLANV ELSNQVNLLI  120
QATLQSQYQA VPFSDYPEQY GSSSLSAAAE KFSVGVDGCG FEKERECEDW DEGFYSKNQN  180
QSSVIEKNLV EDHKEENDRV SLPKSISVRS NGFLKISQIA AAPTRKVSAP TQSVTRIGSP  240
NPVSGPQKVY VRGGSKKEGP IELEVYNQGM FKTELCNKWQ ETKTCPYGDH CQFAHGIDEL  300
RPVIRHPRYK TEVCRMVLSG DSCPYGHRCH FRHALTDEEK LMHPHMHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-20271333466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844986.10.0zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV40.0A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-80C3H family protein