PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_158150_yjnh.t1
Common NameSOVF_158150
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 460aa    MW: 51637.4 Da    PI: 5.9556
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_158150_yjnh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26e-07244339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       e++C+ ++   +  +Ce +  llC +C ++ H+       H++
  Sp_158150_yjnh.t1  2 EKTCEFCGAAWAVVYCEADAALLCLSCDTKVHSAnalfarHSR 44
                       689******99*********************65777777765 PP
2zf-B_box17.77.7e-064678435
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCllee.Hk 35
                         C+ +++k++   C d  +llC+dC  +  H+
  Sp_158150_yjnh.t1 46 LLCDSCKQKPVYVRCLDHFMLLCQDCDKSFpHH 78
                       57**************************99963 PP
3zf-C2H212.30.00056881316
                       ETTTTEEESSHHHH CS
            zf-C2H2  3 CpdCgksFsrksnL 16
                       C+dC+ksF+++ nL
  Sp_158150_yjnh.t1 68 CQDCDKSFPHHNNL 81
                       ***********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
SMARTSM003361.9E-10147IPR000315B-box-type zinc finger
PfamPF006431.1E-5244IPR000315B-box-type zinc finger
CDDcd000216.82E-7547No hitNo description
PROSITE profilePS501199.0864378IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEKTCEFCGA AWAVVYCEAD AALLCLSCDT KVHSANALFA RHSRTLLCDS CKQKPVYVRC  60
LDHFMLLCQD CDKSFPHHNN LIIRSFTGCP SANQFAALSG FDVLHQFSTA TSFITSDTAT  120
GFCTQQHKKL SNHQRMQNNG LIINQILELK NLQLTQGDNQ TKSLHNNGEY VTPSSMHTTS  180
VNERLKQQWK ELNCLTNELQ SLDNSSHLPT SSSSSSSYVG DSFWQYNKSP IDNNINQFWM  240
QNLQDIGMCQ ELGCIDDFNM PDVDITFRNI EDFLIGDPDL TRALVEDNDP MTSDTDKTSM  300
NNLEKCLIET TQDITDASLI STNKHANFIK EVNPLDNVTH QLSRNVENSS HLFRYSRSAT  360
FSCSRLSAER CGSDFLDSGN SGNFTTSEYS DNVAELHGIE VEGGESSTRL SKEKNNSRMD  420
GKKTQLAPRK ARTDLHKRNK SQYAKVQGYE SDTATVTKTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844988.10.0putative zinc finger protein At1g68190
TrEMBLA0A0K9QNX50.0A0A0K9QNX5_SPIOL; Uncharacterized protein
STRINGXP_010681720.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-27B-box type zinc finger protein with CCT domain