PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160120_qmia.t1
Common NameSOVF_160120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 283aa    MW: 32269.5 Da    PI: 9.5703
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160120_qmia.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-166673397
                       -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                       + +++l+++ g  Wev+l +r + ++++ ++GWkeF+ka++ ke+D +vFk++++s+f  +v vf
  Sp_160120_qmia.t1  6 PHKVILKSPGGAAWEVRL-MRDNNDTFFSGDGWKEFAKAHNFKENDLLVFKYIRESCF--KVLVF 67
                       5689**************.5666668999*************************9***..66555 PP
2B346.56.5e-15184273194
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f  v++ s+v+   rl++p + a+++   k++ ++l+    +gr+W+v+++ + + g+ vl +GW +F+ +n L+e D+++Fkl+++ ++e+
  Sp_160120_qmia.t1 184 FTVVMKASNVSFYYRLRIPSPWARTYLTRKNQYMDLR---ADGRKWTVRFNTEPRYGGGVLVTGWYKFAIDNLLQEFDVCLFKLVSQ-KGEP 271
                        7789999*******************66655654444...69********8888888889999*********************985.5545 PP

                        EE CS
                 B3  93 vv 94 
                        vv
  Sp_160120_qmia.t1 272 VV 273
                        54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.93170IPR003340B3 DNA binding domain
SMARTSM010193.7E-6270IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-17468IPR015300DNA-binding pseudobarrel domain
CDDcd100174.71E-17467No hitNo description
Gene3DG3DSA:2.40.330.101.8E-16468IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-13666IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21176281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18178280IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-21183280No hitNo description
SMARTSM010192.3E-8184282IPR003340B3 DNA binding domain
PfamPF023622.9E-13184273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52184282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRDKLPHKVI LKSPGGAAWE VRLMRDNNDT FFSGDGWKEF AKAHNFKEND LLVFKYIRES  60
CFKVLVFGGG NLCEKADSYF VKKSVLGKND AGENSQLKRK STNERTDKVV GNDEELLLET  120
DDSDNEKDAA EASRRKSRRR HSICSLRNNG ADVEPHTPNN VPLSAADKAR AMQLASQETT  180
NESFTVVMKA SNVSFYYRLR IPSPWARTYL TRKNQYMDLR ADGRKWTVRF NTEPRYGGGV  240
LVTGWYKFAI DNLLQEFDVC LFKLVSQKGE PVVFDVSIYR AAP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852506.10.0B3 domain-containing protein REM16-like
TrEMBLA0A0K9QPU40.0A0A0K9QPU4_SPIOL; Uncharacterized protein
STRINGXP_010695063.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-37B3 family protein