PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160140_egdw.t2
Common NameSOVF_160140
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 622aa    MW: 67940.9 Da    PI: 6.1312
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160140_egdw.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.6e-07264284526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C+ Gd C +aHg
  Sp_160140_egdw.t2 264 PCPEFRK-GSCPKGDVCEYAHG 284
                        8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1413139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-1615177IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-958130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00816292IPR002110Ankyrin repeat
PROSITE profilePS5029716.17562137IPR020683Ankyrin repeat-containing domain
CDDcd002041.09E-1264137No hitNo description
SMARTSM002480.00797129IPR002110Ankyrin repeat
PROSITE profilePS5008811.72897132IPR002110Ankyrin repeat
SMARTSM003569.4E-5259285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4263286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389264286IPR000571Zinc finger, CCCH-type
SMARTSM0035656294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MESEDYKKDT IRDHQTSLPL LELSATNDLS SFKDAVEKEG YDLDEASLWY GRRVGSKKMG  60
FEERTPLMVA AMFGSKDILN YILQTSLVDV NRASGSDGAT ALHCAAAGGS LYSHEVIKLL  120
VESSANVDQV DVHGNRPCDV IAPCFSFSSK LKRRTLDILL NKGDEDEDSS DQTEEGIQDL  180
HLEGFSPKSS SDGSGSERKE YPIDPSLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCPKGDVCE YAHGIFECWL HPAQYRTRLC  300
KDEISCARRV CFFAHRPEEL RPLYASTGSA VPSPRSYSSS GPSFDMGSLS PLALGSPSML  360
MPSTSTPPMT PTGASSPIGG AAAWQNHLNI TPPPALQLPG SRLKAALSSR DLGMETGLRR  420
QQLLDELATG VLGRLGGLSL SSPTGVQIRQ NMNQQLLSSY SSGMPSSPVR GSCSSFGMEP  480
GGGSPISNPR LAAFANRSQS FVDRNAVNRL SGGLASPFSH ISDWGSPDGK VDWGVQGDEL  540
NKFRKSASFA YRSSNGNNNS MRGPNGEPDV SWVHSLVKDA PPVNSSSTQH VFEEQYSLNS  600
GMLERIPPWV EQLYMEQEPM AA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852509.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0K9QQB90.0A0A0K9QQB9_SPIOL; Uncharacterized protein
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-178C3H family protein