PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_160910_ryhp.t1
Common NameSOVF_160910
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 413aa    MW: 47428.9 Da    PI: 4.4508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_160910_ryhp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11261304146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r+rWT+++ el+++a  q+G++  + I + ++ gRt+ q+k+++ k
  Sp_160910_ryhp.t1 261 RMRWTKQDTELFYQALSQFGSD-LSMIQQLFP-GRTRHQIKLKYKK 304
                        89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159636.4E-29254339No hitNo description
PROSITE profilePS512939.96259310IPR017884SANT domain
SMARTSM007175.2E-8260308IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6261304IPR009057Homeodomain-like
SuperFamilySSF466891.87E-10263310IPR009057Homeodomain-like
CDDcd001671.41E-6263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
PDGNFSLDSS AYQPDAAVFE DTDSLMPENL PLQREDHGET NSNDALGSFA KSVDEGFLSG  60
FEGNENGYEL LNGINGGFND NNSSYDRAPD ESAPNRDENN DGDHLAVETS QKKRPRKSKK  120
VAAENKKPAR KRKKAAQELD EPIEKPPKKF PRATRRKRIV DKALLEVPDD ELDLQRVPIR  180
DLIILAEYKE RQNRKEAAAD MPPPTSERID DLPPEDPPYY DDNETYGYDQ DGETFDNPST  240
FEVQKDTGYF NYQSFMTKEP RMRWTKQDTE LFYQALSQFG SDLSMIQQLF PGRTRHQIKL  300
KYKKEERQNP MRLHDALTSR RQDLSHFELV IKRLEEQAAE DAKMDKDDSV CITGEEEGPE  360
EVLNTHDDVV NSKKKEEGGA VDQEPDKRQV EIPPKSYYSE EEEIDWSSYK SEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111133KKRPRKSKKVAAENKKPARKRKK
2128134ARKRKKA
3129133RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858349.10.0uncharacterized protein LOC110797534
TrEMBLA0A0K9QQ510.0A0A0K9QQ51_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010671339.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-42MYB_related family protein