PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_160970_kwaq.t1

Common Name

SOVF_160970

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

YABBY

Protein Properties

Length: 259aa MW: 28567.3 Da PI: 7.5757

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_160970_kwaq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230.4	4.5e-71	29	215	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....................lleelk 76 s+q+Cyv+C+fC+t+lavsvPs+slfk+vtvrCGhCt+llsvn++++ + aa s l ++ llee + Sp_160970_kwaq.t1 29 VVSDQLCYVHCEFCDTVLAVSVPSSSLFKTVTVRCGHCTNLLSVNMMVHLLQAAAPSP---PLLPPppplphhlshpsffnpphnnLLEEIR 117 579****************************************9998866555553...2222224455666677899998888888888 PP YABBY 77 veeenlksnvekeesastsvssekl.....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++ n+ +n++++ + +++++ +++++e+p++pp v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWah Sp_160970_kwaq.t1 118 SSTPNILMNNHHQPMFN--DQMMSIrggdhLHHHHQEIPKPPPpVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAH 207 88888777665543322..2222223444467888999998877******************************************** PP YABBY 163 fPkihfgl 170 fP+ihfgl Sp_160970_kwaq.t1 208 FPHIHFGL 215 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-65	30	215	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-8	153	209	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.8E-4	164	207	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0009933	Biological Process	meristem structural organization
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010093	Biological Process	specification of floral organ identity
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010159	Biological Process	specification of organ position
GO:0010450	Biological Process	inflorescence meristem growth
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSSSSSSTTG SGGGGSGFDT TPQTPTEHVV SDQLCYVHCE FCDTVLAVSV PSSSLFKTVT 60 VRCGHCTNLL SVNMMVHLLQ AAAPSPPLLP PPPPLPHHLS HPSFFNPPHN NLLEEIRSST 120 PNILMNNHHQ PMFNDQMMSI RGGDHLHHHH QEIPKPPPPV NRPPEKRQRV PSAYNRFIKD 180 EIQRIKAGNP DISHREAFSA AAKNWAHFPH IHFGLMPDHQ PVKKANVRQQ QEGEHDQVLM 240 KEGGFLAPQA NVNVGIGPY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269\|PubMed:10323860, ECO:0000269\|PubMed:10331982, ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:11812777, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869, ECO:0000269\|PubMed:9878633, ECO:0000269\|Ref.3, ECO:0000269\|Ref.6}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00620	PBM	Transfer from AT2G45190	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839053.1	1e-148	axial regulator YABBY 3-like, partial
Swissprot	O22152	8e-80	YAB1_ARATH; Axial regulator YABBY 1
TrEMBL	A0A0K9QN09	0.0	A0A0K9QN09_SPIOL; Uncharacterized protein
STRING	XP_010692186.1	1e-105	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	9e-74	YABBY family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Tameshige T, et al. Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS Genet., 2013. 9(7): p. e1003655 [PMID:23935517] Boter M, et al. FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate. Plant Cell, 2015. 27(11): p. 3160-74 [PMID:26530088] Douglas SJ,Li B,Kliebenstein DJ,Nambara E,Riggs CD A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE, 2017. 12(5): p. e0177045 [PMID:28493925] Tanaka W,Toriba T,Hirano HY Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice. New Phytol., 2017. 215(2): p. 825-839 [PMID:28556940] Silverblatt-Buser EW,Frick MA,Rabeler C,Kaplinsky NJ Genetic Interactions Between BOB1 and Multiple 26S Proteasome Subunits Suggest a Role for Proteostasis in Regulating Arabidopsis Development. G3 (Bethesda), 2018. 8(4): p. 1379-1390 [PMID:29487187]