PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_161680_twzc.t1
Common NameSOVF_161680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 739aa    MW: 80406.8 Da    PI: 6.2207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_161680_twzc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-162468147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Sp_161680_twzc.t1 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.1441973IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-82170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-152271IPR006447Myb domain, plants
SMARTSM007178.2E-132371IPR001005SANT/Myb domain
PfamPF002491.8E-132467IPR001005SANT/Myb domain
CDDcd001671.43E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MDVYSSGEEP IIKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEALVKG VPIAQAIDIE IPPPRPKRKP SNPYPRKTGA ISSPNTQVKA  120
KDGNQIPPGS IHTTEQVLDS EKEQLAEEAV GGDAESSPKE TDGSDKCSTE AFTLLRKAPS  180
ALGTSSNEVP AMAVGSARKL SNFMEFVPIK KPVADNETRD LNAAAGHNRN HKPDKSDVVD  240
MIQNDSENET NAAKTFPRHA PVHILDGNLG SCSQGLSSDV SYQEPAFHHM GIPDQPSLFS  300
NPTVSAAVES QTSTSRSTNH QIFPNSHPPF SPFPNNQENY SSFLQMSSTF SSMIVSALLQ  360
NPAAHTAASF AASFWPCAIE NSANSTVGGY PHRQMNPTPS VAEIAAATVA AATAWWAAHG  420
LLPLCTPPVH AGFSLPPTSV SAPLANFGQT PVANEEREEI KNSQVPEPQV QQCNQELSEA  480
LQPQHSASKS SATSSPDSGN ITSAKMDVEV AADNNEKNNV PASSEQKDAN KGKSKKQVDR  540
SSCGSNTPSG SDIETDALKK NDLGKEEANE PDVSRPTTSE PSSRRNRLIG NIYESWKEVS  600
EGGRLAFQAL FSREVLPQSF SPPLNVTGKN QEVNVTVGEN RNNAEKGYSG IQFDLNSNAW  660
EFCSSNQGIE NLKLREEDNR KEGLLTFSLE HGNLNTTNRT GFKPYKRCSV EAIESTAMNS  720
NAQQEKCSKR LRLDGEAST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845986.10.0protein LHY isoform X3
TrEMBLA0A0K9QPN90.0A0A0K9QPN9_SPIOL; Uncharacterized protein
STRINGXP_010687317.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.33e-95MYB_related family protein