PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_162160_ztxp.t2
Common NameSOVF_162160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26268.2 Da    PI: 9.0182
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_162160_ztxp.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-261767151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n + rqvtfskRr gi+KKAeELSvLCda++a+i+fs  gkl+++ss
  Sp_162160_ztxp.t2 17 KKIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIVFSAPGKLFDFSS 67
                       68***********************************************96 PP
2K-box34.77.3e-13991791898
              K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        + +l kL  e+ +  +++R+l GedL+   l+eL +Le+ Le+sl+++ ++K + ++ +ie+lqk+ + l een +L++++
  Sp_162160_ztxp.t2  99 NSNLGKLSIEVAEKNKQLRKLRGEDLQGVGLEELLELERMLEDSLTRVLDTKGKRIKHEIETLQKQGDLLMEENLKLKQNM 179
                        445556666666667999***********************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-37968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.931969IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001165IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-301196IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-251131IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-253146IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-254667IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.51295186IPR002487Transcription factor, K-box
PfamPF014863.0E-1199178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009739Biological Processresponse to gibberellin
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010220Biological Processpositive regulation of vernalization response
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAGVRSTTMA REKIKIKKID NITARQVTFS KRRRGIFKKA EELSVLCDAD IALIVFSAPG  60
KLFDFSSSRM GDILSRYTTQ SKNEKKRSEV PFLQLQLENS NLGKLSIEVA EKNKQLRKLR  120
GEDLQGVGLE ELLELERMLE DSLTRVLDTK GKRIKHEIET LQKQGDLLME ENLKLKQNMI  180
ALSQAGTPVL LLDQSATSTI HEEGQYSSES ISNGAPPAIE DDSSNTSLKL GLSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19994186MEF2 CHIMERA
6byy_B2e-19994186MEF2 CHIMERA
6byy_C2e-19994186MEF2 CHIMERA
6byy_D2e-19994186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860151.11e-168MADS-box protein AGL24 isoform X2
SwissprotQ9FUY63e-75JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0K9QMI81e-167A0A0K9QMI8_SPIOL; Uncharacterized protein
STRINGXP_010675143.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-62AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]