PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_162620_yeyg.t1
Common NameSOVF_162620
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 319aa    MW: 35827.7 Da    PI: 4.4947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_162620_yeyg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.5e-1883131153
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                        s+y+GVr++k +g+W+AeIrdp     + +r++lg++ taeeA  a+++ r+++
  Sp_162620_yeyg.t1  83 SKYRGVRQRK-WGKWAAEIRDPI----QgTRVWLGTYNTAEEASMAYEQRRLEY 131
                        89*******9.**********82....36*******************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-1783132IPR016177DNA-binding domain
PfamPF008471.3E-1283131IPR001471AP2/ERF domain
CDDcd000184.51E-2483124No hitNo description
PROSITE profilePS5103219.2384143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2284130IPR001471AP2/ERF domain
SMARTSM003802.2E-1884138IPR001471AP2/ERF domain
PRINTSPR003671.5E-108596IPR001471AP2/ERF domain
PRINTSPR003671.5E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTDLQSFFYS KPKFVGNKTL RKVRVICHDP DLTDSSSDEE NASKRKRPSG SKQIIQEINL  60
PFRGLSETVA KPSKPSTKKP SSSKYRGVRQ RKWGKWAAEI RDPIQGTRVW LGTYNTAEEA  120
SMAYEQRRLE YQALVAEKSL KASCSATTKQ SQNLAVSEDS ESVISHSSPA SVVEIDTSAS  180
QMNPRNSNDV GIDMGKTDCV SSINNEGNRQ FVVESVNDVK ESDYVPVMSI EEEFQRSEIG  240
EGFDLQMELN ASFMFNDFGD MFPKLDSFDD FEVCGFDSLV PSDLPEFEFD FDLSKEDFSS  300
WIEEPRTVAA QPLNFVASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1485126345ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843490.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0K9QMF10.0A0A0K9QMF1_SPIOL; Uncharacterized protein
STRINGXP_010681556.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-31ERF family protein