PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_163700_odhe.t1
Common NameSOVF_163700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TCP
Protein Properties Length: 352aa    MW: 37927.6 Da    PI: 7.0809
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_163700_odhe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.65.8e-3125122166
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                        a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+LG+d++sk +eWL+++a++ i++l ++                           
  Sp_163700_odhe.t1  25 ATGRKDRHSKVFTAKGPRDRRVRLAAHTAIEFYDVQDRLGYDRPSKVVEWLMKKAQTCIDKLDELppwdptasvshggvdmkirstevdvgd 116
                        589**************************************************************887776666666555555555555444 PP

                TCP  66 .....s 66 
                             s
  Sp_163700_odhe.t1 117 ksgstS 122
                        332220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2826135IPR005333Transcription factor, TCP
PROSITE profilePS5136928.9832886IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGLKNTTGGG GGDIVQVQGG HIIRATGRKD RHSKVFTAKG PRDRRVRLAA HTAIEFYDVQ  60
DRLGYDRPSK VVEWLMKKAQ TCIDKLDELP PWDPTASVSH GGVDMKIRST EVDVGDKSGS  120
TSFYVPQCLD SQSVGDSMKS FFPSHNNTIT SGMNYSHEFI SRGGSQNSQD LCLSLHTLQD  180
PGSCGNGQHH HHHHAPSSHD SALFQGSSSS LGFEGRTGEW SESQQQHDLG QFARMFGWPS  240
GGSGGGGGGN LFNPYPLPPQ GLLFGQQHVG PITTATFTQG STLQSNFSPF VCVLEDHKIH  300
NHHHQHHPQD AGNGSDGFIG YYVPSSQIHG GANSMSNNKA SSSSMSPDST QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-203386154Putative transcription factor PCF6
5zkt_B1e-203386154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845296.10.0transcription factor TCP4-like isoform X1
TrEMBLA0A0K9QM170.0A0A0K9QM17_SPIOL; Uncharacterized protein
STRINGXP_010689747.11e-129(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-54TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3