PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_166700_qmuh.t1

Common Name

SOVF_166700

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 267aa MW: 29661.9 Da PI: 6.2796

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_166700_qmuh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	9.4e-10	91	135	6	50
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + +r NReA r++R++Kka ++ Lee+vk+L N+ L +l+ Sp_166700_qmuh.t1 91 KIKRPLGNREAVRKYREKKKAHTAYLEEEVKKLRVLNQHLVRKLQ 135 6788899********************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-10	85	154	No hit	No description
SMART	SM00338	4.5E-8	86	153	IPR004827	Basic-leucine zipper domain
CDD	cd14686	2.71E-10	91	135	No hit	No description
SuperFamily	SSF57959	6.88E-8	91	135	No hit	No description
Pfam	PF07716	7.0E-13	91	141	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDDGEVEPSD PALLQNSTTC NSNDISLPGG SASVDSLFDE LLKNTRTCTH THTCNPPGPD 60 AAHTHTCYHT HTQVFSSEED TNNRRESSSL KIKRPLGNRE AVRKYREKKK AHTAYLEEEV 120 KKLRVLNQHL VRKLQGQAAL EGEILRLRAL LVDLRGKIDT ETFMFQNHCS SNTDIISFKE 180 GGYGTQSTSS KANRLQCQTQ VPCFLPQENQ SMSIGNDQGG DKPVFSWQEN CQPAIVDCHT 240 TENGMVATSD HQLGDMESLL SAKNQSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847086.1	0.0	basic leucine zipper 23-like
Swissprot	Q8GTS2	5e-54	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0K9QL71	0.0	A0A0K9QL71_SPIOL; Uncharacterized protein
STRING	XP_010692028.1	1e-104	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-34	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]