PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_166860_uhpe.t2
Common NameSOVF_166860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 126aa    MW: 14713 Da    PI: 8.0558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_166860_uhpe.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.79.4e-1481106126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +k elC+ +++t tC+yGd C+FaHg
  Sp_166860_uhpe.t2  81 FKSELCNKWQETKTCPYGDHCQFAHG 106
                        699**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.830.108.6E-6264IPR011237Peptidase M16 domain
Gene3DG3DSA:4.10.1000.102.8E-1875113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-1177112IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-780107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.05680108IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-1181106IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MARNLRNTNM KPLNHASYMR LQIPCKAYWD VDDKLRCLAD LSLAEVQDFI PELHSQQKVY  60
VQGGSKKEGP IELEVYNQGM FKSELCNKWQ ETKTCPYGDH CQFAHGIDEL RPVIRHPRCK  120
TEVCRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-1381126449Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835699.19e-93zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_021835700.19e-93zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_021835701.19e-93zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_021835702.19e-93zinc finger CCCH domain-containing protein 14-like isoform X1
SwissprotQ9C9F54e-33C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QL152e-91A0A0K9QL15_SPIOL; Uncharacterized protein (Fragment)
STRINGcassava4.1_022862m3e-38(Manihot esculenta)
STRINGXP_006448374.17e-38(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-35C3H family protein