PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_167040_yftw.t1
Common NameSOVF_167040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 738aa    MW: 83265.9 Da    PI: 5.8671
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_167040_yftw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.72.6e-12143208271
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                        W+++e laL ++r++m+++   +      We vs+k++e gf+rs+++Ckek+e+  + +     + +++
  Sp_167040_yftw.t1 143 WSNDEMLALFRIRSSMDNTWFPD----FIWENVSRKLSEIGFKRSAEKCKEKFEEETRSFNSSIISTNNN 208
                        ******************98877....9***************************999998754333332 PP
2trihelix96.13.2e-30574667186
           trihelix   1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        rW+++evlaLi++r           m ++ r++++k+plWe++s+km e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy++
  Sp_167040_yftw.t1 574 RWPRDEVLALINIRCslfnnnggdTMTHHDRENNAKGPLWERISQKMVELGYKRSAKRCKEKWENINKYFRKTKDLNKKR-SIDSRTCPYYH 664
                        8**************8888888888888888899*********************************************8.78889****** PP

           trihelix  84 qle 86 
                        ql+
  Sp_167040_yftw.t1 665 QLN 667
                        *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2139197IPR001005SANT/Myb domain
PROSITE profilePS500906.202142195IPR017877Myb-like domain
PfamPF138372.9E-8142204No hitNo description
PROSITE profilePS500906.342567640IPR017877Myb-like domain
SMARTSM007170.23571642IPR001005SANT/Myb domain
CDDcd122036.24E-24573647No hitNo description
PfamPF138375.1E-19573668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MFDGMPEQFY QFLAAAATTS RATPPTKIIS NTTASLSLPL SFSLHHHQNH AVAAAAFPTY  60
SPQPQPPPPP PPQLSFDAPY HPLLHHHHHP HSQFVTRNNE VVKVVENTTL THSPLSTQLP  120
TSLQDSGESQ RSSSVMMLPE IPWSNDEMLA LFRIRSSMDN TWFPDFIWEN VSRKLSEIGF  180
KRSAEKCKEK FEEETRSFNS SIISTNNNCS NKNTTPSNNN NYRLFGELEQ LCNNNNNINN  240
INDDDNVDHG GGGGGGGGDD HCPQTSLSQG TLCPDEDDNE GENEDWNEGE EDMIQGDRVG  300
NDEVGEDYTR NDKDDYKDNV EGDEQSVDDS EKTEENTKRV MRKRKRQKKF EMFKGFCEKI  360
VSKMMTQQEE LHLKILEDMV KRDEEKVAKE EAWKKQEFVR LEKELEDRAH EQAVSGDRQA  420
KILDFLNKVG TSSNILDSKS IKEVFEKLNK VPNITLSNSS VLTQDSIISA QLQPTSSCTT  480
HHDHNHTHLV TNIPSSSSTE NIALLSCIKF DNSKLPMSSS SLDQPSQNPI CRPSNNELSH  540
KFPRPDHTNT DATEHVTKLK SLENESGKDD TGRRWPRDEV LALINIRCSL FNNNGGDTMT  600
HHDRENNAKG PLWERISQKM VELGYKRSAK RCKEKWENIN KYFRKTKDLN KKRSIDSRTC  660
PYYHQLNHLY NQGTLMGPSD QPMNNPGSPE NGTITLSGQS QGNGLTTPAN NGATTNKMHA  720
PQGNEANVVQ VPGFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341348RKRKRQKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846162.10.0trihelix transcription factor GTL2
TrEMBLA0A0K9QL430.0A0A0K9QL43_SPIOL; Uncharacterized protein
STRINGXP_010675079.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-58Trihelix family protein