PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_168810_zeap.t1
Common NameSOVF_168810
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 264aa    MW: 28467.9 Da    PI: 8.2318
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_168810_zeap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.48.7e-42551541100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+a
  Sp_168810_zeap.t1  55 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQVLQA 146
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el+++++e
  Sp_168810_zeap.t1 147 ELNAVRAE 154
                        ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.66254155IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-4255152IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSRERERFDE IGKKIKRDND AFSRGGGGGG GGGGGGGGRR HFQLGPPGIL NTTTPCAACK  60
LLRRRCAQEC PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVPENQRAD AANSLVYEAN  120
VRLRDPVYGC MGAISALQQQ VQVLQAELNA VRAEILKYKY REANHLSNNI ISTNNNINNN  180
PNPSPSSHDL TFFSPGAAVS IAVPPPLTPA IPTPSPPPPP PPPPPPLHNI PPHSSSSMYT  240
HEPSSSTPDH DHYSSISNED IYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-445516211118LOB family transfactor Ramosa2.1
5ly0_B5e-445516211118LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12338RGGGGGGGGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847016.10.0LOB domain-containing protein 15
SwissprotQ8L5T52e-78LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A0K9QMH90.0A0A0K9QMH9_SPIOL; Uncharacterized protein
STRINGXP_010695789.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-76LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]