PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_169580_qitj.t1
Common NameSOVF_169580
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 548aa    MW: 60417.5 Da    PI: 6.5999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_169580_qitj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-11162186226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t +Ck+Gd+CkF H+
  Sp_169580_qitj.t1 162 GEKDCTHYMLTRICKFGDNCKFDHP 186
                        7889********************8 PP
2zf-CCCH30.18e-10213239127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f++t  CkyG  CkF+H++
  Sp_169580_qitj.t1 213 PGEPDCPYFLKTQKCKYGLMCKFNHPK 239
                        5789*********************96 PP
3zf-CCCH41.91.7e-13260284327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++lC+f+++tG Ck+G+ CkF+H++
  Sp_169580_qitj.t1 260 EPLCSFYMKTGKCKFGAACKFHHPK 284
                        79*********************96 PP
4zf-CCCH36.96e-12340361526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+f+++tG CkyG +C+++H+
  Sp_169580_qitj.t1 340 DCPFYMKTGSCKYGVNCRYNHP 361
                        6********************9 PP
5zf-CCCH40.64.2e-13428451326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        + +C+++++tG+Ck+G+rC+F+H+
  Sp_169580_qitj.t1 428 QTECDYYMKTGECKFGERCRFHHP 451
                        568********************8 PP
6zf-CCCH31.62.8e-10479500627
                        -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                        C+f+++tGtC+y  +CkF H+p
  Sp_169580_qitj.t1 479 CPFYMKTGTCSYAVNCKFDHPP 500
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.46160188IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4160187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5161187IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8162186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901212240IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5212239IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7214239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5217243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4218239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117257285IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7257284IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-11260284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6261285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6262283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07335363IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5339362IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9340361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5341361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7423454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704425453IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6425452IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10429451IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5431451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314473501IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4473500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5476500IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4478498IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7479500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MANQLYNHQK PYSSIYNTTS RSTVDSYLTE PPSSFRTSSR YLSTFSDPPS SSSYFRTPPS  60
SAAAATASER HSLSSYDSPR PTVSTAGGAA SRSFVSTYGS LWPSFDVSSA ITKRPSEALY  120
DHPVLGTQMI GQYEPWFTSD SLTKRPRLES ASNLPIYPQR PGEKDCTHYM LTRICKFGDN  180
CKFDHPIWVP AGGIPDWKEP PSVPSFESYP ERPGEPDCPY FLKTQKCKYG LMCKFNHPKD  240
KLDTSGSKTD DPDLPDRPSE PLCSFYMKTG KCKFGAACKF HHPKDIQVPS DGQEADDGAQ  300
THSADQHNTA GDVNAVKTLT SNPASSYNTK GMPMRTGELD CPFYMKTGSC KYGVNCRYNH  360
PDRNELLPPY SVINPTAAMV GHGVLPSLAK FNAGLVNPAV SLLQSLQPGL AQTMFGQVPV  420
MYPQRPSQTE CDYYMKTGEC KFGERCRFHH PIDRSAPTSN QTLKFTLAGL PRREGVQHCP  480
FYMKTGTCSY AVNCKFDHPP PGEVMALAGP ETSTKAEEEG PEIEENVGTE NEEIVGTKNE  540
ENVASAEE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854330.10.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_021854331.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-169C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0K9QLX90.0A0A0K9QLX9_SPIOL; Uncharacterized protein
STRINGXP_010693153.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-170floral homeotic protein (HUA1)