PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_170200_ftdh.t1
Common NameSOVF_170200
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 123aa    MW: 13685.9 Da    PI: 9.0605
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_170200_ftdh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.83e-46131121100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l++
  Sp_170200_ftdh.t1  13 PCAACKLLRRRCAPDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQELPMQQRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQT 104
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  Sp_170200_ftdh.t1 105 QLAVAQAE 112
                        ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.5312113IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-4613110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MKENGRKQGA VSPCAACKLL RRRCAPDCVF APYFPADEPQ KFANVHRVFG ASNVNKMLQE  60
LPMQQRGDAV SSMVYEANAR IRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEVVHLRMRH  120
IPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5091147112LOB family transfactor Ramosa2.1
5ly0_B1e-5091147112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854327.13e-87LOB domain-containing protein 4
SwissprotQ9SHE91e-69LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0K9QK546e-86A0A0K9QK54_SPIOL; Uncharacterized protein
STRINGXP_010667079.18e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-72LOB domain-containing protein 4