PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_170630_gkqf.t1

Common Name

SOVF_170630

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

TCP

Protein Properties

Length: 383aa MW: 42107.7 Da PI: 6.929

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_170630_gkqf.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.2	1.3e-29	25	244	1	133
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak +i++l ++ Sp_170630_gkqf.t1 25 ATGRKDRHSKVFTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLMKKAKSSIDKLEELppwdpianasngvdvnvgstefpvgdn 116 589****************************************************************************************9 PP TCP 66 ..............................ssssasec..eaesssssasnsssg..................................... 88 + ++ ++ s + Sp_170630_gkqf.t1 117 tgstsfyvpqcvdsqslsdsmksffptnnnN-----NSnnNNTSV---------Ensisfqnyqqpdfisrggshqnsqdlclslhtlqdpr 194 9999999999888777655555555332220.....111122222.........13344444446677777777777777777777777777 PP TCP 89 ................................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +++++++++++++++++ Sp_170630_gkqf.t1 195 gqhqtqhlshdsalfqgsgsslgfdvgwtesqQ---------------------------QQQQQQQQQQQQQQQQQ 244 755555555555555555555555554443210...........................11111111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.5E-28	26	252	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.136	28	86	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MGVKNNTNGG GGEIVQVQGG HIIRATGRKD RHSKVFTAKG PRDRRVRLAA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLMKKAK SSIDKLEELP PWDPIANASN GVDVNVGSTE FPVGDNTGST 120 SFYVPQCVDS QSLSDSMKSF FPTNNNNNSN NNNTSVENSI SFQNYQQPDF ISRGGSHQNS 180 QDLCLSLHTL QDPRGQHQTQ HLSHDSALFQ GSGSSLGFDV GWTESQQQQQ QQQQQQQQQQ 240 QQQQQQQQQQ QQQQQDLGRF ARMFGWPICG SSNGGGEGRG GMLFNPSQLQ QQGLLLGQQG 300 PMTTSAYSQR GTLQSSFSPL ARVLEDQQHH HHPQEISSIG NGSDGFMGFY IPSQLHGELH 360 GGTNSLSNNR ASSSSLSPDS SQH

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MGVKNNTNGG GGEIVQVQGG HIIRATGRKD RHSKVFTAKG PRDRRVRLAA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLMKKAK SSIDKLEELP PWDPIANASN GVDVNVGSTE FPVGDNTGST  120
SFYVPQCVDS QSLSDSMKSF FPTNNNNNSN NNNTSVENSI SFQNYQQPDF ISRGGSHQNS  180
QDLCLSLHTL QDPRGQHQTQ HLSHDSALFQ GSGSSLGFDV GWTESQQQQQ QQQQQQQQQQ  240
QQQQQQQQQQ QQQQQDLGRF ARMFGWPICG SSNGGGEGRG GMLFNPSQLQ QQGLLLGQQG  300
PMTTSAYSQR GTLQSSFSPL ARVLEDQQHH HHPQEISSIG NGSDGFMGFY IPSQLHGELH  360
GGTNSLSNNR ASSSSLSPDS SQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-21	33	86	1	54	Putative transcription factor PCF6
5zkt_B	4e-21	33	86	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021845298.1	0.0	transcription factor TCP4-like
TrEMBL	A0A0K9QJY5	0.0	A0A0K9QJY5_SPIOL; Uncharacterized protein
STRING	XP_010689747.1	1e-150	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-52	TCP family protein