PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_170880_jzno.t1

Common Name

SOVF_170880

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 315aa MW: 37009.4 Da PI: 8.7426

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_170880_jzno.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.4e-16	27	102	1	83
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 ffk++ ++++ l++p++f+ ++g+ s +l+ +sg++Wev++ k+++ +++++GW++Fvk++g+keg f+vF+ Sp_170880_jzno.t1 27 FFKIM--LGDFEHH-LRIPRHFIGCFMGD--LSHSSVLKGPSGNEWEVQI--IKTKEDVLFSNGWEKFVKDHGIKEGCFLVFR 102 77777..7788888.******666766..66679**********..999999**********************9 PP
2	B3	53.1	5.8e-17	200	297	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f+ v+ p +v l++pk+ a eh+++k +++l++ + +sW v ++ + +++++ ++ W+ Fv +n+L+e D++vF+l ++ ++++ Sp_170880_jzno.t1 200 FEIVMRPTHVYDGFHLTIPKEWALEHMHPKDHEVKLRVPGGKEESWVVGCR-WTSQRQCQIRPRWSTFVLDNNLEEHDVCVFELLQKgESGK 290 778999999**9********99988877777777777***6.555567889********************998779998 PP .EEEEE- CS B3 92 lvvkvfr 98 ++ +f+ Sp_170880_jzno.t1 291 NRLPIFD 297 8887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.434	24	122	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.3E-19	24	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.02E-19	25	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.10E-14	27	102	No hit	No description
SMART	SM01019	1.7E-9	27	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-15	27	102	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.3E-20	192	302	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-19	194	302	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.89E-17	199	302	No hit	No description
SMART	SM01019	1.1E-12	200	291	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-15	200	297	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.503	200	299	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MANICETCED LKKYKYWHDL QNIKHQFFKI MLGDFEHHLR IPRHFIGCFM GDLSHSSVLK 60 GPSGNEWEVQ IIKTKEDVLF SNGWEKFVKD HGIKEGCFLV FRSLLHLEND EGCSQTTKFA 120 ATKLSESKLM KKKLDISSDE EMEMGDRPSR RSRRTSQGKQ SQMHYISKRR EVTEEEKDHA 180 KDMARNHNKS SSKSSRKRMF EIVMRPTHVY DGFHLTIPKE WALEHMHPKD HEVKLRVPGG 240 KEESWVVGCR WTSQRQCQIR PRWSTFVLDN NLEEHDVCVF ELLQKGESGK NRLPIFDVHI 300 FRVVSEVVPL TVLRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846843.1	0.0	B3 domain-containing protein Os01g0723500-like
TrEMBL	A0A0K9QLP1	0.0	A0A0K9QLP1_SPIOL; Uncharacterized protein
STRING	XP_010691310.1	1e-106	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-24	B3 family protein