PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172040_pmpz.t1
Common NameSOVF_172040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 394aa    MW: 43553.6 Da    PI: 4.6596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172040_pmpz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19103153256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr++  +g+WvAeIr+p   + r kr +lg++ ta eAa  +++a+++++ge
  Sp_172040_pmpz.t1 103 KYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTYPTALEAALSYDEAARAMYGE 153
                        7*****999.**********8...3.35*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-35103166IPR001471AP2/ERF domain
PfamPF008471.9E-13103153IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-20103161IPR016177DNA-binding domain
PROSITE profilePS5103221.733103160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-29103160IPR001471AP2/ERF domain
CDDcd000182.94E-30103161No hitNo description
PRINTSPR003671.3E-8104115IPR001471AP2/ERF domain
PRINTSPR003671.3E-8126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
SSYVLGDFRK IVNEVVVSGA VETGFDSNLH RPCLNYSFQR RRKTRRRCDG TDSLADTLAK  60
WKEINEKLCE QKEDGKPVRK APAKGSKKGC MKGKGGPENS LFKYRGVRQR TWGKWVAEIR  120
EPNRGKRLWL GTYPTALEAA LSYDEAARAM YGESARLNLP YYPAPVREDS RDDSASASYT  180
TATTTSASYT TACTTSGNNS DVYVGEQWDG VTGGATVKRE DIEGDSEFDF KNASAGFKVG  240
TPGTPVDKEE KAVVDNGEGD QGGIDINDYL HNLTMDEMFD VDELLGAIDA GPVSPVGNTT  300
TQGHDAYGAF RSQVENNSIQ LERPESWSNH EQNPNYFHLF QNQDDVNLYG SVNNSDQGYN  360
GVNYGFDFLN PDRQEDSSLP VEDHGFLNLG ELGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-16104160360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843QRRRKT
23845QRRRKTRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855823.10.0dehydration-responsive element-binding protein 2C-like isoform X2
TrEMBLA0A0K9QLF60.0A0A0K9QLF6_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010692919.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-38ERF family protein