PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_172220_nqmk.t1
Common NameSOVF_172220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YC
Protein Properties Length: 261aa    MW: 29081.7 Da    PI: 10.3497
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_172220_nqmk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.29.7e-10149240999
              NF-YC   9 qiekatdfknhelPlarikkilkadedvk.misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        + e++++  + ++P  ri +i+k++     +is ea  l+ ka e f+  ++  ++  a e +++ +    +a+av + +  dfl d vp++
  Sp_172220_nqmk.t1 149 KEEEKEESSECAFPTNRIIRIVKSEGSSDfKISGEAVFLINKAAEKFVELFSKDAYDSAVEDRKSFVAYKHLASAVFKEKRLDFLSDFVPEK 240
                        456777788999************9876538****************9999999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.11E-14152238IPR009072Histone-fold
PfamPF008081.1E-12161224IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.6E-18161239IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
IGERNMSSSK RFEKTFSRKN KVTNKESTVA AYTEEEVEEH ILISQLKSSS SSKQKQNGKL  60
ENSKSNTNKN GSKSAIVDSK KKSTPATTQK PNNKKDGSGV KQKIENADQT QKQKRKAENG  120
GGERQKEKKP KTVVTASKAA KNDKKVKEKE EEKEESSECA FPTNRIIRIV KSEGSSDFKI  180
SGEAVFLINK AAEKFVELFS KDAYDSAVED RKSFVAYKHL ASAVFKEKRL DFLSDFVPEK  240
VTAEKALAER KPAENLPQLP G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858721.11e-155DNA polymerase epsilon subunit C
TrEMBLA0A0K9QJH20.0A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010689566.15e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-27nuclear factor Y, subunit C10